Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0867

Experiment: KB with Brucine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0865 and Psyr_0866 are separated by 65 nucleotidesPsyr_0866 and Psyr_0867 are separated by 86 nucleotidesPsyr_0867 and Psyr_0868 are separated by 257 nucleotides Psyr_0865: Psyr_0865 - General substrate transporter:Major facilitator superfamily, at 984,855 to 986,063 _0865 Psyr_0866: Psyr_0866 - CDP-diacylglycerol-choline O-phosphatidyltransferase, at 986,129 to 986,848 _0866 Psyr_0867: Psyr_0867 - conserved hypothetical protein, at 986,935 to 988,947 _0867 Psyr_0868: Psyr_0868 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 989,205 to 990,845 _0868 Position (kb) 986 987 988 989Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 986.001 kb on + strandat 986.061 kb on + strandat 986.061 kb on + strandat 986.062 kb on - strandat 986.138 kb on - strandat 986.174 kb on - strandat 986.174 kb on - strandat 986.190 kb on + strandat 986.190 kb on + strandat 986.276 kb on + strand, within Psyr_0866at 986.276 kb on + strand, within Psyr_0866at 986.276 kb on + strand, within Psyr_0866at 986.277 kb on - strand, within Psyr_0866at 986.277 kb on - strand, within Psyr_0866at 986.412 kb on + strand, within Psyr_0866at 986.412 kb on + strand, within Psyr_0866at 986.412 kb on + strand, within Psyr_0866at 986.412 kb on + strand, within Psyr_0866at 986.413 kb on - strand, within Psyr_0866at 986.413 kb on - strand, within Psyr_0866at 986.413 kb on - strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.461 kb on - strand, within Psyr_0866at 986.461 kb on - strand, within Psyr_0866at 986.461 kb on - strand, within Psyr_0866at 986.461 kb on - strand, within Psyr_0866at 986.558 kb on + strand, within Psyr_0866at 986.559 kb on - strand, within Psyr_0866at 986.559 kb on - strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.563 kb on - strand, within Psyr_0866at 986.563 kb on - strand, within Psyr_0866at 986.568 kb on + strand, within Psyr_0866at 986.568 kb on + strand, within Psyr_0866at 986.568 kb on + strand, within Psyr_0866at 986.568 kb on + strand, within Psyr_0866at 986.569 kb on - strand, within Psyr_0866at 986.595 kb on + strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.781 kb on - strandat 986.868 kb on + strandat 986.868 kb on + strandat 986.868 kb on + strandat 986.869 kb on - strandat 986.869 kb on - strandat 986.869 kb on - strandat 986.869 kb on - strandat 986.909 kb on + strandat 986.931 kb on - strandat 987.008 kb on + strandat 987.008 kb on + strandat 987.008 kb on + strandat 987.008 kb on + strandat 987.009 kb on - strandat 987.009 kb on - strandat 987.033 kb on + strandat 987.097 kb on + strandat 987.098 kb on - strandat 987.125 kb on - strandat 987.198 kb on + strand, within Psyr_0867at 987.198 kb on + strand, within Psyr_0867at 987.199 kb on - strand, within Psyr_0867at 987.218 kb on + strand, within Psyr_0867at 987.218 kb on + strand, within Psyr_0867at 987.218 kb on + strand, within Psyr_0867at 987.218 kb on + strand, within Psyr_0867at 987.218 kb on + strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.220 kb on + strand, within Psyr_0867at 987.303 kb on + strand, within Psyr_0867at 987.303 kb on + strand, within Psyr_0867at 987.303 kb on + strand, within Psyr_0867at 987.303 kb on + strand, within Psyr_0867at 987.304 kb on - strand, within Psyr_0867at 987.304 kb on - strand, within Psyr_0867at 987.304 kb on - strand, within Psyr_0867at 987.353 kb on + strand, within Psyr_0867at 987.353 kb on + strand, within Psyr_0867at 987.354 kb on - strand, within Psyr_0867at 987.380 kb on + strand, within Psyr_0867at 987.380 kb on + strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.701 kb on + strand, within Psyr_0867at 987.701 kb on + strand, within Psyr_0867at 987.701 kb on + strand, within Psyr_0867at 987.702 kb on - strand, within Psyr_0867at 987.702 kb on - strand, within Psyr_0867at 987.702 kb on - strand, within Psyr_0867at 987.863 kb on + strand, within Psyr_0867at 987.864 kb on - strand, within Psyr_0867at 988.142 kb on + strand, within Psyr_0867at 988.142 kb on + strand, within Psyr_0867at 988.142 kb on + strand, within Psyr_0867at 988.142 kb on + strand, within Psyr_0867at 988.143 kb on - strand, within Psyr_0867at 988.143 kb on - strand, within Psyr_0867at 988.283 kb on + strand, within Psyr_0867at 988.283 kb on + strand, within Psyr_0867at 988.284 kb on - strand, within Psyr_0867at 988.286 kb on + strand, within Psyr_0867at 988.286 kb on + strand, within Psyr_0867at 988.286 kb on + strand, within Psyr_0867at 988.287 kb on - strand, within Psyr_0867at 988.287 kb on - strand, within Psyr_0867at 988.287 kb on - strand, within Psyr_0867at 988.287 kb on - strand, within Psyr_0867at 988.287 kb on - strand, within Psyr_0867at 988.287 kb on - strand, within Psyr_0867at 988.474 kb on - strand, within Psyr_0867at 988.601 kb on + strand, within Psyr_0867at 988.630 kb on - strand, within Psyr_0867at 988.659 kb on - strand, within Psyr_0867at 988.741 kb on - strand, within Psyr_0867at 988.765 kb on + strandat 988.765 kb on + strandat 988.766 kb on - strandat 988.769 kb on + strandat 988.770 kb on - strandat 988.770 kb on - strandat 988.770 kb on - strandat 988.846 kb on + strandat 988.888 kb on + strandat 989.014 kb on + strandat 989.015 kb on - strandat 989.015 kb on - strandat 989.015 kb on - strandat 989.081 kb on + strandat 989.082 kb on - strandat 989.129 kb on + strandat 989.129 kb on + strandat 989.129 kb on + strandat 989.129 kb on + strandat 989.129 kb on + strandat 989.130 kb on - strandat 989.130 kb on - strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.135 kb on + strandat 989.136 kb on - strandat 989.136 kb on - strandat 989.136 kb on - strandat 989.136 kb on - strandat 989.136 kb on - strandat 989.136 kb on - strandat 989.136 kb on - strandat 989.176 kb on - strandat 989.218 kb on - strandat 989.218 kb on - strandat 989.218 kb on - strandat 989.218 kb on - strandat 989.290 kb on + strandat 989.290 kb on + strandat 989.291 kb on - strandat 989.291 kb on - strandat 989.293 kb on + strandat 989.293 kb on + strandat 989.294 kb on - strandat 989.294 kb on - strandat 989.342 kb on + strandat 989.422 kb on + strand, within Psyr_0868at 989.423 kb on - strand, within Psyr_0868at 989.514 kb on + strand, within Psyr_0868at 989.674 kb on + strand, within Psyr_0868at 989.674 kb on + strand, within Psyr_0868at 989.674 kb on + strand, within Psyr_0868at 989.674 kb on + strand, within Psyr_0868at 989.674 kb on + strand, within Psyr_0868at 989.674 kb on + strand, within Psyr_0868at 989.674 kb on + strand, within Psyr_0868at 989.674 kb on + strand, within Psyr_0868at 989.674 kb on + strand, within Psyr_0868at 989.675 kb on - strand, within Psyr_0868at 989.675 kb on - strand, within Psyr_0868at 989.675 kb on - strand, within Psyr_0868at 989.675 kb on - strand, within Psyr_0868at 989.675 kb on - strand, within Psyr_0868at 989.675 kb on - strand, within Psyr_0868at 989.675 kb on - strand, within Psyr_0868at 989.686 kb on - strand, within Psyr_0868at 989.717 kb on - strand, within Psyr_0868at 989.717 kb on - strand, within Psyr_0868at 989.729 kb on + strand, within Psyr_0868at 989.796 kb on + strand, within Psyr_0868at 989.796 kb on + strand, within Psyr_0868at 989.796 kb on + strand, within Psyr_0868at 989.796 kb on + strand, within Psyr_0868at 989.797 kb on - strand, within Psyr_0868at 989.797 kb on - strand, within Psyr_0868at 989.797 kb on - strand, within Psyr_0868at 989.797 kb on - strand, within Psyr_0868at 989.797 kb on - strand, within Psyr_0868at 989.797 kb on - strand, within Psyr_0868at 989.797 kb on - strand, within Psyr_0868at 989.797 kb on - strand, within Psyr_0868at 989.797 kb on - strand, within Psyr_0868at 989.848 kb on + strand, within Psyr_0868at 989.848 kb on + strand, within Psyr_0868at 989.848 kb on + strand, within Psyr_0868at 989.848 kb on + strand, within Psyr_0868at 989.848 kb on + strand, within Psyr_0868at 989.848 kb on + strand, within Psyr_0868at 989.848 kb on + strand, within Psyr_0868at 989.848 kb on + strand, within Psyr_0868at 989.848 kb on + strand, within Psyr_0868at 989.849 kb on - strand, within Psyr_0868at 989.849 kb on - strandat 989.849 kb on - strand, within Psyr_0868at 989.849 kb on - strand, within Psyr_0868at 989.849 kb on - strand, within Psyr_0868

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Brucine 10 mM
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986,001 + -0.1
986,061 + +0.5
986,061 + -1.0
986,062 - +1.2
986,138 - +1.3
986,174 - +0.4
986,174 - -1.0
986,190 + -0.4
986,190 + +0.3
986,276 + Psyr_0866 0.20 -0.5
986,276 + Psyr_0866 0.20 -1.5
986,276 + Psyr_0866 0.20 -0.5
986,277 - Psyr_0866 0.21 -1.4
986,277 - Psyr_0866 0.21 +1.4
986,412 + Psyr_0866 0.39 +0.3
986,412 + Psyr_0866 0.39 -1.5
986,412 + Psyr_0866 0.39 -0.3
986,412 + Psyr_0866 0.39 -0.7
986,413 - Psyr_0866 0.39 +0.0
986,413 - Psyr_0866 0.39 -0.2
986,413 - Psyr_0866 0.39 -0.0
986,460 + Psyr_0866 0.46 +0.0
986,460 + Psyr_0866 0.46 +0.2
986,460 + Psyr_0866 0.46 -2.4
986,460 + Psyr_0866 0.46 -2.0
986,460 + Psyr_0866 0.46 -0.3
986,460 + Psyr_0866 0.46 -1.6
986,460 + Psyr_0866 0.46 -0.9
986,461 - Psyr_0866 0.46 -0.4
986,461 - Psyr_0866 0.46 +0.2
986,461 - Psyr_0866 0.46 +0.6
986,461 - Psyr_0866 0.46 -1.1
986,558 + Psyr_0866 0.60 +0.2
986,559 - Psyr_0866 0.60 +1.7
986,559 - Psyr_0866 0.60 +0.8
986,560 + Psyr_0866 0.60 +2.8
986,560 + Psyr_0866 0.60 -2.5
986,560 + Psyr_0866 0.60 +0.4
986,560 + Psyr_0866 0.60 -0.3
986,560 + Psyr_0866 0.60 -0.6
986,560 + Psyr_0866 0.60 -1.0
986,560 + Psyr_0866 0.60 -0.0
986,560 + Psyr_0866 0.60 -2.8
986,560 + Psyr_0866 0.60 +1.4
986,561 - Psyr_0866 0.60 +0.4
986,561 - Psyr_0866 0.60 -0.4
986,561 - Psyr_0866 0.60 -0.3
986,561 - Psyr_0866 0.60 -0.4
986,561 - Psyr_0866 0.60 +0.6
986,561 - Psyr_0866 0.60 +1.2
986,562 + Psyr_0866 0.60 -1.2
986,562 + Psyr_0866 0.60 -0.7
986,562 + Psyr_0866 0.60 -0.3
986,562 + Psyr_0866 0.60 +0.5
986,562 + Psyr_0866 0.60 -1.5
986,562 + Psyr_0866 0.60 -0.1
986,563 - Psyr_0866 0.60 -0.0
986,563 - Psyr_0866 0.60 +1.2
986,568 + Psyr_0866 0.61 -0.6
986,568 + Psyr_0866 0.61 +0.1
986,568 + Psyr_0866 0.61 +0.2
986,568 + Psyr_0866 0.61 +0.8
986,569 - Psyr_0866 0.61 -0.6
986,595 + Psyr_0866 0.65 -0.6
986,596 - Psyr_0866 0.65 -0.7
986,596 - Psyr_0866 0.65 +1.5
986,596 - Psyr_0866 0.65 -0.5
986,596 - Psyr_0866 0.65 +0.7
986,596 - Psyr_0866 0.65 -0.7
986,596 - Psyr_0866 0.65 -1.5
986,781 - -2.5
986,868 + +0.7
986,868 + +0.3
986,868 + +0.4
986,869 - -1.6
986,869 - +0.2
986,869 - +1.7
986,869 - -0.1
986,909 + -0.5
986,931 - +0.1
987,008 + +0.5
987,008 + +0.4
987,008 + -0.4
987,008 + -0.3
987,009 - +0.9
987,009 - -0.2
987,033 + -0.2
987,097 + -0.8
987,098 - +0.6
987,125 - +1.2
987,198 + Psyr_0867 0.13 -0.3
987,198 + Psyr_0867 0.13 -0.1
987,199 - Psyr_0867 0.13 -0.5
987,218 + Psyr_0867 0.14 -1.4
987,218 + Psyr_0867 0.14 +0.2
987,218 + Psyr_0867 0.14 -1.8
987,218 + Psyr_0867 0.14 +0.1
987,218 + Psyr_0867 0.14 -0.7
987,219 - Psyr_0867 0.14 +0.5
987,219 - Psyr_0867 0.14 +1.5
987,219 - Psyr_0867 0.14 -0.8
987,219 - Psyr_0867 0.14 +0.2
987,219 - Psyr_0867 0.14 +0.3
987,219 - Psyr_0867 0.14 +0.1
987,219 - Psyr_0867 0.14 -1.6
987,219 - Psyr_0867 0.14 +0.0
987,220 + Psyr_0867 0.14 +1.6
987,303 + Psyr_0867 0.18 +0.6
987,303 + Psyr_0867 0.18 -0.1
987,303 + Psyr_0867 0.18 -0.9
987,303 + Psyr_0867 0.18 +0.2
987,304 - Psyr_0867 0.18 -0.1
987,304 - Psyr_0867 0.18 +0.3
987,304 - Psyr_0867 0.18 -2.3
987,353 + Psyr_0867 0.21 +1.2
987,353 + Psyr_0867 0.21 +1.2
987,354 - Psyr_0867 0.21 -1.0
987,380 + Psyr_0867 0.22 -0.9
987,380 + Psyr_0867 0.22 -0.9
987,381 - Psyr_0867 0.22 +0.7
987,381 - Psyr_0867 0.22 +0.7
987,381 - Psyr_0867 0.22 -0.1
987,381 - Psyr_0867 0.22 -1.0
987,381 - Psyr_0867 0.22 +1.6
987,381 - Psyr_0867 0.22 -1.4
987,381 - Psyr_0867 0.22 -0.0
987,381 - Psyr_0867 0.22 -1.2
987,701 + Psyr_0867 0.38 +0.5
987,701 + Psyr_0867 0.38 -0.0
987,701 + Psyr_0867 0.38 +0.5
987,702 - Psyr_0867 0.38 +0.5
987,702 - Psyr_0867 0.38 +0.1
987,702 - Psyr_0867 0.38 -0.6
987,863 + Psyr_0867 0.46 -0.0
987,864 - Psyr_0867 0.46 -0.1
988,142 + Psyr_0867 0.60 -1.1
988,142 + Psyr_0867 0.60 +0.4
988,142 + Psyr_0867 0.60 -0.5
988,142 + Psyr_0867 0.60 -0.8
988,143 - Psyr_0867 0.60 +0.6
988,143 - Psyr_0867 0.60 +0.8
988,283 + Psyr_0867 0.67 -0.3
988,283 + Psyr_0867 0.67 +1.0
988,284 - Psyr_0867 0.67 -1.6
988,286 + Psyr_0867 0.67 -1.0
988,286 + Psyr_0867 0.67 -0.3
988,286 + Psyr_0867 0.67 -0.2
988,287 - Psyr_0867 0.67 +0.4
988,287 - Psyr_0867 0.67 -0.0
988,287 - Psyr_0867 0.67 -0.3
988,287 - Psyr_0867 0.67 -0.1
988,287 - Psyr_0867 0.67 -0.5
988,287 - Psyr_0867 0.67 -0.4
988,474 - Psyr_0867 0.76 -1.8
988,601 + Psyr_0867 0.83 +0.7
988,630 - Psyr_0867 0.84 -0.1
988,659 - Psyr_0867 0.86 +0.7
988,741 - Psyr_0867 0.90 +0.4
988,765 + +0.3
988,765 + +0.2
988,766 - -0.2
988,769 + +0.7
988,770 - +0.2
988,770 - -0.3
988,770 - -0.5
988,846 + +0.7
988,888 + -0.1
989,014 + +1.6
989,015 - +1.2
989,015 - +0.2
989,015 - +0.7
989,081 + +2.0
989,082 - +0.0
989,129 + -0.1
989,129 + +0.3
989,129 + +0.2
989,129 + -2.5
989,129 + -1.1
989,130 - -1.0
989,130 - -0.7
989,135 + -0.3
989,135 + -0.1
989,135 + -0.3
989,135 + -0.2
989,135 + +0.2
989,135 + +1.5
989,135 + +1.1
989,135 + +0.9
989,135 + +1.4
989,135 + -1.1
989,135 + +0.5
989,135 + +0.7
989,135 + -0.7
989,135 + +0.0
989,135 + -0.1
989,136 - -0.6
989,136 - +0.7
989,136 - +0.0
989,136 - +0.5
989,136 - +0.1
989,136 - -0.6
989,136 - +0.1
989,176 - +0.1
989,218 - -0.2
989,218 - -1.1
989,218 - -0.5
989,218 - -0.1
989,290 + +0.3
989,290 + +0.2
989,291 - -2.9
989,291 - -0.5
989,293 + -0.4
989,293 + -0.1
989,294 - +1.1
989,294 - +0.2
989,342 + +1.0
989,422 + Psyr_0868 0.13 +0.3
989,423 - Psyr_0868 0.13 -0.8
989,514 + Psyr_0868 0.19 +0.7
989,674 + Psyr_0868 0.29 -1.1
989,674 + Psyr_0868 0.29 +1.0
989,674 + Psyr_0868 0.29 -1.6
989,674 + Psyr_0868 0.29 +1.1
989,674 + Psyr_0868 0.29 +0.2
989,674 + Psyr_0868 0.29 -0.3
989,674 + Psyr_0868 0.29 -0.1
989,674 + Psyr_0868 0.29 +1.0
989,674 + Psyr_0868 0.29 -0.2
989,675 - Psyr_0868 0.29 +0.6
989,675 - Psyr_0868 0.29 -1.1
989,675 - Psyr_0868 0.29 +1.2
989,675 - Psyr_0868 0.29 +0.2
989,675 - Psyr_0868 0.29 +0.8
989,675 - Psyr_0868 0.29 +0.5
989,675 - Psyr_0868 0.29 +0.8
989,686 - Psyr_0868 0.29 -0.4
989,717 - Psyr_0868 0.31 +0.2
989,717 - Psyr_0868 0.31 +0.1
989,729 + Psyr_0868 0.32 -0.8
989,796 + Psyr_0868 0.36 +0.5
989,796 + Psyr_0868 0.36 +0.4
989,796 + Psyr_0868 0.36 +0.1
989,796 + Psyr_0868 0.36 +0.8
989,797 - Psyr_0868 0.36 +1.7
989,797 - Psyr_0868 0.36 -0.6
989,797 - Psyr_0868 0.36 -0.5
989,797 - Psyr_0868 0.36 +0.9
989,797 - Psyr_0868 0.36 -0.3
989,797 - Psyr_0868 0.36 +0.2
989,797 - Psyr_0868 0.36 -0.5
989,797 - Psyr_0868 0.36 -0.0
989,797 - Psyr_0868 0.36 +0.6
989,848 + Psyr_0868 0.39 -1.4
989,848 + Psyr_0868 0.39 -0.4
989,848 + Psyr_0868 0.39 +0.3
989,848 + Psyr_0868 0.39 -0.7
989,848 + Psyr_0868 0.39 -0.0
989,848 + Psyr_0868 0.39 +0.3
989,848 + Psyr_0868 0.39 +1.2
989,848 + Psyr_0868 0.39 +0.7
989,848 + Psyr_0868 0.39 -0.0
989,849 - Psyr_0868 0.39 +0.9
989,849 - +1.9
989,849 - Psyr_0868 0.39 -0.9
989,849 - Psyr_0868 0.39 -0.7
989,849 - Psyr_0868 0.39 -1.3

Or see this region's nucleotide sequence