Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34885

Experiment: Suberic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS34875 and BPHYT_RS34880 are separated by 251 nucleotidesBPHYT_RS34880 and BPHYT_RS34885 are separated by 333 nucleotidesBPHYT_RS34885 and BPHYT_RS34890 are separated by 56 nucleotidesBPHYT_RS34890 and BPHYT_RS34895 overlap by 8 nucleotides BPHYT_RS34875: BPHYT_RS34875 - hypothetical protein, at 3,427,978 to 3,428,313 _RS34875 BPHYT_RS34880: BPHYT_RS34880 - hypothetical protein, at 3,428,565 to 3,428,936 _RS34880 BPHYT_RS34885: BPHYT_RS34885 - hypothetical protein, at 3,429,270 to 3,431,009 _RS34885 BPHYT_RS34890: BPHYT_RS34890 - hypothetical protein, at 3,431,066 to 3,431,326 _RS34890 BPHYT_RS34895: BPHYT_RS34895 - endonuclease, at 3,431,319 to 3,432,068 _RS34895 Position (kb) 3429 3430 3431 3432Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3428.522 kb on - strandat 3428.526 kb on - strandat 3428.799 kb on + strand, within BPHYT_RS34880at 3429.156 kb on - strandat 3429.165 kb on + strandat 3429.251 kb on - strandat 3429.330 kb on + strandat 3429.447 kb on - strand, within BPHYT_RS34885at 3429.450 kb on + strand, within BPHYT_RS34885at 3429.567 kb on + strand, within BPHYT_RS34885at 3430.010 kb on - strand, within BPHYT_RS34885at 3430.215 kb on - strand, within BPHYT_RS34885at 3430.226 kb on + strand, within BPHYT_RS34885at 3430.416 kb on + strand, within BPHYT_RS34885at 3430.425 kb on + strand, within BPHYT_RS34885at 3430.426 kb on - strand, within BPHYT_RS34885at 3431.578 kb on + strand, within BPHYT_RS34895at 3431.579 kb on - strand, within BPHYT_RS34895at 3431.582 kb on + strand, within BPHYT_RS34895at 3431.761 kb on + strand, within BPHYT_RS34895at 3431.927 kb on - strand, within BPHYT_RS34895

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Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
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3,428,522 - -0.2
3,428,526 - -2.6
3,428,799 + BPHYT_RS34880 0.63 -0.6
3,429,156 - -0.3
3,429,165 + +0.7
3,429,251 - +0.5
3,429,330 + -0.5
3,429,447 - BPHYT_RS34885 0.10 +5.5
3,429,450 + BPHYT_RS34885 0.10 +1.0
3,429,567 + BPHYT_RS34885 0.17 +1.3
3,430,010 - BPHYT_RS34885 0.43 +0.6
3,430,215 - BPHYT_RS34885 0.54 -0.1
3,430,226 + BPHYT_RS34885 0.55 +0.0
3,430,416 + BPHYT_RS34885 0.66 +0.7
3,430,425 + BPHYT_RS34885 0.66 -1.6
3,430,426 - BPHYT_RS34885 0.66 -0.4
3,431,578 + BPHYT_RS34895 0.35 +0.1
3,431,579 - BPHYT_RS34895 0.35 -1.8
3,431,582 + BPHYT_RS34895 0.35 -1.1
3,431,761 + BPHYT_RS34895 0.59 -1.5
3,431,927 - BPHYT_RS34895 0.81 -1.4

Or see this region's nucleotide sequence