Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4050

Experiment: Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4049 and BT4050 are separated by 95 nucleotidesBT4050 and BT4051 are separated by 120 nucleotides BT4049: BT4049 - putative ArgK protein with ATPase and kinase domains (NCBI ptt file), at 5,272,838 to 5,273,932 BT4049 BT4050: BT4050 - beta-galactosidase (NCBI ptt file), at 5,274,028 to 5,278,056 BT4050 BT4051: BT4051 - conserved hypothetical protein (NCBI ptt file), at 5,278,177 to 5,279,094 BT4051 Position (kb) 5274 5275 5276 5277 5278 5279Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5273.155 kb on - strand, within BT4049at 5273.258 kb on - strand, within BT4049at 5273.434 kb on + strand, within BT4049at 5273.525 kb on - strand, within BT4049at 5273.552 kb on - strand, within BT4049at 5273.702 kb on + strand, within BT4049at 5273.704 kb on + strand, within BT4049at 5273.801 kb on - strand, within BT4049at 5273.806 kb on - strand, within BT4049at 5273.807 kb on + strand, within BT4049at 5273.905 kb on + strandat 5273.933 kb on + strandat 5273.975 kb on + strandat 5273.988 kb on + strandat 5273.988 kb on + strandat 5273.989 kb on - strandat 5273.989 kb on - strandat 5274.041 kb on + strandat 5274.063 kb on + strandat 5274.064 kb on - strandat 5274.074 kb on + strandat 5274.112 kb on + strandat 5274.112 kb on + strandat 5274.193 kb on + strandat 5274.250 kb on - strandat 5274.337 kb on + strandat 5274.430 kb on - strandat 5274.433 kb on + strand, within BT4050at 5274.433 kb on + strand, within BT4050at 5274.449 kb on + strand, within BT4050at 5274.526 kb on + strand, within BT4050at 5274.656 kb on - strand, within BT4050at 5274.660 kb on - strand, within BT4050at 5274.681 kb on + strand, within BT4050at 5274.683 kb on - strandat 5274.710 kb on - strand, within BT4050at 5274.753 kb on + strand, within BT4050at 5274.786 kb on + strand, within BT4050at 5274.786 kb on + strand, within BT4050at 5274.826 kb on + strand, within BT4050at 5274.886 kb on + strand, within BT4050at 5274.887 kb on - strand, within BT4050at 5274.888 kb on + strand, within BT4050at 5274.959 kb on + strand, within BT4050at 5274.960 kb on - strand, within BT4050at 5274.962 kb on - strand, within BT4050at 5274.965 kb on - strand, within BT4050at 5274.973 kb on + strand, within BT4050at 5275.002 kb on + strand, within BT4050at 5275.003 kb on - strand, within BT4050at 5275.003 kb on - strand, within BT4050at 5275.003 kb on - strand, within BT4050at 5275.010 kb on + strand, within BT4050at 5275.086 kb on - strand, within BT4050at 5275.095 kb on + strand, within BT4050at 5275.212 kb on + strand, within BT4050at 5275.261 kb on + strand, within BT4050at 5275.261 kb on + strand, within BT4050at 5275.261 kb on + strand, within BT4050at 5275.262 kb on - strand, within BT4050at 5275.262 kb on - strand, within BT4050at 5275.366 kb on - strand, within BT4050at 5275.400 kb on - strand, within BT4050at 5275.433 kb on - strand, within BT4050at 5275.451 kb on - strand, within BT4050at 5275.455 kb on + strand, within BT4050at 5275.482 kb on - strand, within BT4050at 5275.495 kb on + strand, within BT4050at 5275.498 kb on + strand, within BT4050at 5275.499 kb on - strand, within BT4050at 5275.499 kb on - strand, within BT4050at 5275.501 kb on + strand, within BT4050at 5275.501 kb on + strand, within BT4050at 5275.502 kb on - strand, within BT4050at 5275.696 kb on + strand, within BT4050at 5275.705 kb on - strand, within BT4050at 5275.707 kb on + strand, within BT4050at 5275.707 kb on + strand, within BT4050at 5275.708 kb on - strand, within BT4050at 5275.719 kb on - strand, within BT4050at 5275.781 kb on - strand, within BT4050at 5275.803 kb on + strand, within BT4050at 5275.804 kb on - strand, within BT4050at 5275.804 kb on - strand, within BT4050at 5275.814 kb on - strand, within BT4050at 5275.923 kb on + strand, within BT4050at 5275.928 kb on - strand, within BT4050at 5275.934 kb on - strand, within BT4050at 5275.934 kb on - strand, within BT4050at 5276.054 kb on - strand, within BT4050at 5276.057 kb on - strand, within BT4050at 5276.057 kb on - strand, within BT4050at 5276.072 kb on + strand, within BT4050at 5276.072 kb on + strand, within BT4050at 5276.099 kb on + strand, within BT4050at 5276.100 kb on - strand, within BT4050at 5276.140 kb on + strand, within BT4050at 5276.141 kb on - strand, within BT4050at 5276.145 kb on + strand, within BT4050at 5276.175 kb on - strand, within BT4050at 5276.234 kb on + strand, within BT4050at 5276.235 kb on - strand, within BT4050at 5276.235 kb on - strand, within BT4050at 5276.235 kb on - strand, within BT4050at 5276.235 kb on - strand, within BT4050at 5276.307 kb on + strand, within BT4050at 5276.315 kb on + strand, within BT4050at 5276.322 kb on + strand, within BT4050at 5276.423 kb on + strand, within BT4050at 5276.486 kb on + strand, within BT4050at 5276.487 kb on - strand, within BT4050at 5276.487 kb on - strand, within BT4050at 5276.487 kb on - strand, within BT4050at 5276.511 kb on - strand, within BT4050at 5276.532 kb on + strand, within BT4050at 5276.533 kb on - strand, within BT4050at 5276.548 kb on + strand, within BT4050at 5276.633 kb on - strand, within BT4050at 5276.687 kb on - strand, within BT4050at 5276.700 kb on + strand, within BT4050at 5276.775 kb on + strand, within BT4050at 5276.775 kb on + strand, within BT4050at 5276.858 kb on + strand, within BT4050at 5276.969 kb on - strand, within BT4050at 5276.986 kb on + strand, within BT4050at 5277.003 kb on - strand, within BT4050at 5277.003 kb on - strand, within BT4050at 5277.006 kb on + strand, within BT4050at 5277.006 kb on + strand, within BT4050at 5277.007 kb on - strand, within BT4050at 5277.007 kb on - strand, within BT4050at 5277.010 kb on + strand, within BT4050at 5277.047 kb on - strand, within BT4050at 5277.048 kb on + strand, within BT4050at 5277.165 kb on - strand, within BT4050at 5277.236 kb on - strand, within BT4050at 5277.262 kb on + strand, within BT4050at 5277.262 kb on + strand, within BT4050at 5277.441 kb on + strand, within BT4050at 5277.479 kb on - strand, within BT4050at 5277.522 kb on + strand, within BT4050at 5277.570 kb on + strand, within BT4050at 5277.571 kb on - strand, within BT4050at 5277.587 kb on - strandat 5277.588 kb on + strand, within BT4050at 5277.589 kb on - strand, within BT4050at 5277.589 kb on - strand, within BT4050at 5277.594 kb on + strand, within BT4050at 5277.666 kb on + strandat 5277.720 kb on + strandat 5277.739 kb on + strandat 5277.813 kb on + strandat 5277.818 kb on - strandat 5277.860 kb on - strandat 5277.860 kb on - strandat 5277.865 kb on - strandat 5277.909 kb on + strandat 5277.910 kb on - strandat 5277.977 kb on - strandat 5277.979 kb on - strandat 5278.054 kb on + strandat 5278.054 kb on + strandat 5278.070 kb on + strandat 5278.071 kb on - strandat 5278.071 kb on - strandat 5278.084 kb on - strandat 5278.084 kb on - strandat 5278.110 kb on - strandat 5278.233 kb on + strandat 5278.236 kb on - strandat 5278.258 kb on - strandat 5278.336 kb on - strand, within BT4051at 5278.337 kb on + strand, within BT4051at 5278.337 kb on + strand, within BT4051at 5278.338 kb on - strand, within BT4051at 5278.338 kb on - strand, within BT4051at 5278.341 kb on + strand, within BT4051at 5278.343 kb on + strand, within BT4051at 5278.348 kb on - strand, within BT4051at 5278.397 kb on + strand, within BT4051at 5278.398 kb on - strand, within BT4051at 5278.427 kb on + strand, within BT4051at 5278.428 kb on - strand, within BT4051at 5278.428 kb on - strand, within BT4051at 5278.432 kb on + strand, within BT4051at 5278.506 kb on - strand, within BT4051at 5278.521 kb on - strand, within BT4051at 5278.524 kb on + strand, within BT4051at 5278.525 kb on - strand, within BT4051at 5278.525 kb on - strand, within BT4051at 5278.653 kb on + strand, within BT4051at 5278.684 kb on - strand, within BT4051at 5278.696 kb on - strand, within BT4051at 5278.718 kb on - strand, within BT4051at 5278.731 kb on + strand, within BT4051at 5278.770 kb on + strand, within BT4051at 5278.774 kb on + strand, within BT4051at 5278.809 kb on + strand, within BT4051at 5278.836 kb on + strand, within BT4051at 5278.837 kb on - strand, within BT4051at 5278.840 kb on + strandat 5278.960 kb on + strand, within BT4051

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM
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5,273,155 - BT4049 0.29 -0.0
5,273,258 - BT4049 0.38 +1.0
5,273,434 + BT4049 0.54 -1.6
5,273,525 - BT4049 0.63 -3.4
5,273,552 - BT4049 0.65 -2.3
5,273,702 + BT4049 0.79 -0.8
5,273,704 + BT4049 0.79 -2.6
5,273,801 - BT4049 0.88 -1.6
5,273,806 - BT4049 0.88 -3.4
5,273,807 + BT4049 0.88 -1.3
5,273,905 + -0.0
5,273,933 + -0.8
5,273,975 + -1.8
5,273,988 + -1.0
5,273,988 + -0.3
5,273,989 - -3.1
5,273,989 - -0.3
5,274,041 + -0.0
5,274,063 + -0.6
5,274,064 - -1.5
5,274,074 + +0.6
5,274,112 + -0.5
5,274,112 + -2.0
5,274,193 + -3.5
5,274,250 - -2.3
5,274,337 + -2.8
5,274,430 - -1.6
5,274,433 + BT4050 0.10 -2.8
5,274,433 + BT4050 0.10 -2.0
5,274,449 + BT4050 0.10 +1.0
5,274,526 + BT4050 0.12 -0.8
5,274,656 - BT4050 0.16 -2.6
5,274,660 - BT4050 0.16 -0.4
5,274,681 + BT4050 0.16 -1.9
5,274,683 - -0.0
5,274,710 - BT4050 0.17 -1.2
5,274,753 + BT4050 0.18 -1.7
5,274,786 + BT4050 0.19 -3.2
5,274,786 + BT4050 0.19 -2.7
5,274,826 + BT4050 0.20 -2.4
5,274,886 + BT4050 0.21 -2.5
5,274,887 - BT4050 0.21 -1.2
5,274,888 + BT4050 0.21 -0.3
5,274,959 + BT4050 0.23 -1.6
5,274,960 - BT4050 0.23 -1.0
5,274,962 - BT4050 0.23 -0.7
5,274,965 - BT4050 0.23 -1.9
5,274,973 + BT4050 0.23 -2.0
5,275,002 + BT4050 0.24 -1.0
5,275,003 - BT4050 0.24 +0.2
5,275,003 - BT4050 0.24 -0.6
5,275,003 - BT4050 0.24 -1.8
5,275,010 + BT4050 0.24 -1.4
5,275,086 - BT4050 0.26 -0.9
5,275,095 + BT4050 0.26 +1.0
5,275,212 + BT4050 0.29 -1.1
5,275,261 + BT4050 0.31 -1.8
5,275,261 + BT4050 0.31 -1.0
5,275,261 + BT4050 0.31 +0.6
5,275,262 - BT4050 0.31 -1.7
5,275,262 - BT4050 0.31 +3.4
5,275,366 - BT4050 0.33 -2.0
5,275,400 - BT4050 0.34 -2.5
5,275,433 - BT4050 0.35 -1.0
5,275,451 - BT4050 0.35 -1.0
5,275,455 + BT4050 0.35 -3.0
5,275,482 - BT4050 0.36 -1.4
5,275,495 + BT4050 0.36 -0.9
5,275,498 + BT4050 0.36 -1.1
5,275,499 - BT4050 0.37 -1.0
5,275,499 - BT4050 0.37 -0.8
5,275,501 + BT4050 0.37 -1.4
5,275,501 + BT4050 0.37 -1.6
5,275,502 - BT4050 0.37 +0.3
5,275,696 + BT4050 0.41 -2.0
5,275,705 - BT4050 0.42 -0.6
5,275,707 + BT4050 0.42 -1.4
5,275,707 + BT4050 0.42 -2.0
5,275,708 - BT4050 0.42 -2.4
5,275,719 - BT4050 0.42 -0.0
5,275,781 - BT4050 0.44 -1.2
5,275,803 + BT4050 0.44 -1.5
5,275,804 - BT4050 0.44 -2.2
5,275,804 - BT4050 0.44 -2.0
5,275,814 - BT4050 0.44 -1.6
5,275,923 + BT4050 0.47 -1.0
5,275,928 - BT4050 0.47 -0.0
5,275,934 - BT4050 0.47 -0.7
5,275,934 - BT4050 0.47 +2.0
5,276,054 - BT4050 0.50 -1.2
5,276,057 - BT4050 0.50 -1.4
5,276,057 - BT4050 0.50 -2.4
5,276,072 + BT4050 0.51 -1.0
5,276,072 + BT4050 0.51 -2.4
5,276,099 + BT4050 0.51 -2.2
5,276,100 - BT4050 0.51 -3.0
5,276,140 + BT4050 0.52 -0.0
5,276,141 - BT4050 0.52 -1.3
5,276,145 + BT4050 0.53 -2.3
5,276,175 - BT4050 0.53 -1.0
5,276,234 + BT4050 0.55 -2.4
5,276,235 - BT4050 0.55 -0.0
5,276,235 - BT4050 0.55 +1.0
5,276,235 - BT4050 0.55 -2.0
5,276,235 - BT4050 0.55 -0.0
5,276,307 + BT4050 0.57 -1.9
5,276,315 + BT4050 0.57 -3.5
5,276,322 + BT4050 0.57 -0.4
5,276,423 + BT4050 0.59 -2.0
5,276,486 + BT4050 0.61 -1.6
5,276,487 - BT4050 0.61 +1.8
5,276,487 - BT4050 0.61 -1.4
5,276,487 - BT4050 0.61 -1.0
5,276,511 - BT4050 0.62 -1.3
5,276,532 + BT4050 0.62 -0.0
5,276,533 - BT4050 0.62 -1.0
5,276,548 + BT4050 0.63 -0.2
5,276,633 - BT4050 0.65 -0.0
5,276,687 - BT4050 0.66 -1.1
5,276,700 + BT4050 0.66 -0.6
5,276,775 + BT4050 0.68 -2.4
5,276,775 + BT4050 0.68 -1.6
5,276,858 + BT4050 0.70 -2.9
5,276,969 - BT4050 0.73 -1.3
5,276,986 + BT4050 0.73 -0.0
5,277,003 - BT4050 0.74 -0.0
5,277,003 - BT4050 0.74 -1.1
5,277,006 + BT4050 0.74 -0.4
5,277,006 + BT4050 0.74 -1.4
5,277,007 - BT4050 0.74 -2.3
5,277,007 - BT4050 0.74 -0.0
5,277,010 + BT4050 0.74 -0.5
5,277,047 - BT4050 0.75 -1.3
5,277,048 + BT4050 0.75 -0.4
5,277,165 - BT4050 0.78 -2.6
5,277,236 - BT4050 0.80 -1.5
5,277,262 + BT4050 0.80 -2.6
5,277,262 + BT4050 0.80 -0.3
5,277,441 + BT4050 0.85 -2.3
5,277,479 - BT4050 0.86 -3.5
5,277,522 + BT4050 0.87 -0.7
5,277,570 + BT4050 0.88 -1.0
5,277,571 - BT4050 0.88 -3.4
5,277,587 - -0.0
5,277,588 + BT4050 0.88 -1.0
5,277,589 - BT4050 0.88 -1.8
5,277,589 - BT4050 0.88 +1.2
5,277,594 + BT4050 0.89 -0.0
5,277,666 + -0.9
5,277,720 + +1.6
5,277,739 + -1.4
5,277,813 + -0.6
5,277,818 - -1.5
5,277,860 - +0.6
5,277,860 - -0.0
5,277,865 - -2.7
5,277,909 + -2.3
5,277,910 - -0.7
5,277,977 - +1.0
5,277,979 - -0.7
5,278,054 + -3.1
5,278,054 + -0.9
5,278,070 + -1.0
5,278,071 - -1.0
5,278,071 - +0.1
5,278,084 - +0.6
5,278,084 - -0.9
5,278,110 - -2.4
5,278,233 + -1.9
5,278,236 - -0.9
5,278,258 - -3.5
5,278,336 - BT4051 0.17 -1.2
5,278,337 + BT4051 0.17 -2.0
5,278,337 + BT4051 0.17 -1.6
5,278,338 - BT4051 0.18 -0.0
5,278,338 - BT4051 0.18 -2.2
5,278,341 + BT4051 0.18 -1.0
5,278,343 + BT4051 0.18 -1.8
5,278,348 - BT4051 0.19 +0.3
5,278,397 + BT4051 0.24 -3.9
5,278,398 - BT4051 0.24 +1.0
5,278,427 + BT4051 0.27 -2.2
5,278,428 - BT4051 0.27 -0.0
5,278,428 - BT4051 0.27 -1.7
5,278,432 + BT4051 0.28 -1.3
5,278,506 - BT4051 0.36 -1.5
5,278,521 - BT4051 0.37 +0.7
5,278,524 + BT4051 0.38 +1.0
5,278,525 - BT4051 0.38 -0.0
5,278,525 - BT4051 0.38 +2.3
5,278,653 + BT4051 0.52 -0.0
5,278,684 - BT4051 0.55 -0.0
5,278,696 - BT4051 0.57 -1.0
5,278,718 - BT4051 0.59 -1.1
5,278,731 + BT4051 0.60 -1.5
5,278,770 + BT4051 0.65 -1.0
5,278,774 + BT4051 0.65 -1.0
5,278,809 + BT4051 0.69 -1.2
5,278,836 + BT4051 0.72 -0.3
5,278,837 - BT4051 0.72 -0.9
5,278,840 + -1.0
5,278,960 + BT4051 0.85 -2.4

Or see this region's nucleotide sequence