Experiment: KB with Pterin-6-Carboxylic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4655 and Psyr_4656 are separated by 282 nucleotides Psyr_4656 and Psyr_4657 are separated by 217 nucleotides Psyr_4657 and Psyr_4658 overlap by 4 nucleotides Psyr_4658 and Psyr_4659 are separated by 193 nucleotides
Psyr_4655: Psyr_4655 - hypothetical protein, at 5,516,978 to 5,517,334
_4655
Psyr_4656: Psyr_4656 - hypothetical protein, at 5,517,617 to 5,517,946
_4656
Psyr_4657: Psyr_4657 - CDS, at 5,518,164 to 5,518,826
_4657
Psyr_4658: Psyr_4658 - CDS, at 5,518,823 to 5,519,035
_4658
Psyr_4659: Psyr_4659 - type III effector HopAB1, at 5,519,229 to 5,520,779
_4659
Position (kb) 5518
5519 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5517.255 kb on + strand, within Psyr_4655 at 5517.256 kb on - strand, within Psyr_4655 at 5517.256 kb on - strand, within Psyr_4655 at 5517.256 kb on - strand, within Psyr_4655 at 5517.351 kb on + strand at 5517.351 kb on + strand at 5517.351 kb on + strand at 5517.351 kb on + strand at 5517.352 kb on - strand at 5517.352 kb on - strand at 5517.352 kb on - strand at 5517.355 kb on + strand at 5517.355 kb on + strand at 5517.355 kb on + strand at 5517.355 kb on + strand at 5517.355 kb on + strand at 5517.355 kb on + strand at 5517.355 kb on + strand at 5517.355 kb on + strand at 5517.356 kb on - strand at 5517.356 kb on - strand at 5517.356 kb on - strand at 5517.356 kb on - strand at 5517.356 kb on - strand at 5517.356 kb on - strand at 5517.356 kb on - strand at 5517.356 kb on - strand at 5517.356 kb on - strand at 5517.356 kb on - strand at 5517.356 kb on - strand at 5517.356 kb on - strand at 5517.395 kb on + strand at 5517.395 kb on + strand at 5517.395 kb on + strand at 5517.395 kb on + strand at 5517.396 kb on - strand at 5517.396 kb on - strand at 5517.396 kb on - strand at 5517.396 kb on - strand at 5517.396 kb on - strand at 5517.396 kb on - strand at 5517.396 kb on - strand at 5517.396 kb on - strand at 5517.396 kb on - strand at 5517.396 kb on - strand at 5517.396 kb on - strand at 5517.396 kb on - strand at 5517.396 kb on - strand at 5517.411 kb on + strand at 5517.412 kb on - strand at 5517.440 kb on + strand at 5517.440 kb on + strand at 5517.441 kb on - strand at 5517.441 kb on - strand at 5517.441 kb on - strand at 5517.441 kb on - strand at 5517.522 kb on + strand at 5517.532 kb on + strand at 5517.619 kb on - strand at 5517.619 kb on - strand at 5517.619 kb on - strand at 5517.626 kb on + strand at 5517.626 kb on + strand at 5517.626 kb on + strand at 5517.627 kb on - strand at 5517.627 kb on - strand at 5517.627 kb on - strand at 5517.627 kb on - strand at 5517.751 kb on + strand, within Psyr_4656 at 5517.751 kb on + strand, within Psyr_4656 at 5517.751 kb on + strand, within Psyr_4656 at 5517.752 kb on - strand, within Psyr_4656 at 5517.752 kb on - strand, within Psyr_4656 at 5517.773 kb on - strand, within Psyr_4656 at 5517.785 kb on + strand, within Psyr_4656 at 5517.786 kb on - strand, within Psyr_4656 at 5517.786 kb on - strand, within Psyr_4656 at 5517.786 kb on - strand, within Psyr_4656 at 5517.813 kb on + strand, within Psyr_4656 at 5517.830 kb on + strand, within Psyr_4656 at 5517.889 kb on + strand, within Psyr_4656 at 5517.889 kb on + strand, within Psyr_4656 at 5517.890 kb on - strand, within Psyr_4656 at 5517.916 kb on + strand at 5517.916 kb on + strand at 5517.917 kb on - strand at 5517.917 kb on - strand at 5517.978 kb on + strand at 5517.979 kb on - strand at 5517.979 kb on - strand at 5517.979 kb on - strand at 5517.979 kb on - strand at 5518.021 kb on + strand at 5518.021 kb on + strand at 5518.021 kb on + strand at 5518.021 kb on + strand at 5518.022 kb on - strand at 5518.022 kb on - strand at 5518.059 kb on - strand at 5518.126 kb on + strand at 5518.126 kb on + strand at 5518.126 kb on + strand at 5518.126 kb on + strand at 5518.126 kb on + strand at 5518.126 kb on + strand at 5518.127 kb on - strand at 5518.127 kb on - strand at 5518.127 kb on - strand at 5518.173 kb on + strand at 5518.173 kb on + strand at 5518.174 kb on - strand at 5518.174 kb on - strand at 5518.174 kb on - strand at 5518.189 kb on + strand at 5518.190 kb on - strand at 5518.200 kb on + strand at 5518.201 kb on - strand at 5518.204 kb on + strand at 5518.205 kb on - strand at 5518.205 kb on - strand at 5518.205 kb on - strand at 5518.205 kb on - strand at 5518.205 kb on - strand at 5518.205 kb on - strand at 5518.363 kb on - strand, within Psyr_4657 at 5518.407 kb on + strand, within Psyr_4657 at 5518.407 kb on + strand, within Psyr_4657 at 5518.407 kb on + strand, within Psyr_4657 at 5518.407 kb on + strand, within Psyr_4657 at 5518.407 kb on + strand, within Psyr_4657 at 5518.681 kb on - strand, within Psyr_4657 at 5518.681 kb on - strand, within Psyr_4657 at 5518.681 kb on - strand, within Psyr_4657 at 5518.681 kb on - strand, within Psyr_4657 at 5518.681 kb on - strand, within Psyr_4657 at 5518.681 kb on - strand, within Psyr_4657 at 5518.681 kb on - strand, within Psyr_4657 at 5518.681 kb on - strand, within Psyr_4657 at 5518.681 kb on - strand, within Psyr_4657 at 5518.681 kb on - strand, within Psyr_4657 at 5518.681 kb on - strand, within Psyr_4657 at 5518.681 kb on - strand, within Psyr_4657 at 5518.681 kb on - strand, within Psyr_4657 at 5518.741 kb on + strand, within Psyr_4657 at 5518.741 kb on + strand, within Psyr_4657 at 5518.741 kb on + strand, within Psyr_4657 at 5518.771 kb on + strand at 5518.779 kb on + strand at 5518.793 kb on - strand at 5518.869 kb on + strand, within Psyr_4658 at 5518.870 kb on - strand, within Psyr_4658 at 5518.979 kb on - strand, within Psyr_4658 at 5519.067 kb on + strand at 5519.092 kb on + strand at 5519.092 kb on + strand at 5519.113 kb on + strand at 5519.113 kb on + strand at 5519.113 kb on + strand at 5519.113 kb on + strand at 5519.113 kb on + strand at 5519.113 kb on + strand at 5519.113 kb on + strand at 5519.113 kb on + strand at 5519.113 kb on + strand at 5519.113 kb on + strand at 5519.113 kb on + strand at 5519.114 kb on - strand at 5519.114 kb on - strand at 5519.114 kb on - strand at 5519.114 kb on - strand at 5519.114 kb on - strand at 5519.114 kb on - strand at 5519.114 kb on - strand at 5519.114 kb on - strand at 5519.114 kb on - strand at 5519.114 kb on - strand at 5519.114 kb on - strand at 5519.114 kb on - strand at 5519.114 kb on - strand at 5519.114 kb on - strand at 5519.115 kb on + strand at 5519.115 kb on + strand at 5519.115 kb on + strand at 5519.115 kb on + strand at 5519.115 kb on + strand at 5519.115 kb on + strand at 5519.115 kb on + strand at 5519.115 kb on + strand at 5519.115 kb on + strand at 5519.115 kb on + strand at 5519.115 kb on + strand at 5519.115 kb on + strand at 5519.115 kb on + strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.116 kb on - strand at 5519.117 kb on + strand at 5519.117 kb on + strand at 5519.118 kb on - strand at 5519.246 kb on + strand at 5519.246 kb on + strand at 5519.247 kb on - strand at 5519.255 kb on - strand at 5519.265 kb on - strand at 5519.316 kb on + strand at 5519.316 kb on + strand at 5519.317 kb on - strand at 5519.340 kb on - strand at 5519.360 kb on + strand at 5519.360 kb on + strand at 5519.361 kb on - strand at 5519.361 kb on - strand at 5519.376 kb on - strand at 5519.376 kb on - strand at 5519.377 kb on + strand at 5519.378 kb on - strand at 5519.378 kb on - strand at 5519.388 kb on + strand, within Psyr_4659 at 5519.388 kb on + strand, within Psyr_4659 at 5519.388 kb on + strand, within Psyr_4659 at 5519.388 kb on + strand, within Psyr_4659 at 5519.388 kb on + strand, within Psyr_4659 at 5519.388 kb on + strand, within Psyr_4659 at 5519.388 kb on + strand, within Psyr_4659 at 5519.388 kb on + strand, within Psyr_4659 at 5519.388 kb on + strand, within Psyr_4659 at 5519.388 kb on + strand, within Psyr_4659 at 5519.388 kb on + strand, within Psyr_4659 at 5519.388 kb on + strand, within Psyr_4659 at 5519.388 kb on + strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.389 kb on - strand, within Psyr_4659 at 5519.435 kb on + strand, within Psyr_4659 at 5519.564 kb on + strand, within Psyr_4659 at 5519.565 kb on - strand, within Psyr_4659 at 5519.565 kb on - strand, within Psyr_4659 at 5519.565 kb on - strand, within Psyr_4659 at 5519.565 kb on - strand, within Psyr_4659 at 5519.574 kb on + strand, within Psyr_4659 at 5519.574 kb on + strand, within Psyr_4659 at 5519.575 kb on - strand, within Psyr_4659 at 5519.575 kb on - strand, within Psyr_4659 at 5519.575 kb on - strand, within Psyr_4659 at 5519.624 kb on + strand, within Psyr_4659 at 5519.625 kb on - strand, within Psyr_4659 at 5519.625 kb on - strand, within Psyr_4659 at 5519.625 kb on - strand, within Psyr_4659 at 5519.625 kb on - strand, within Psyr_4659 at 5519.625 kb on - strand, within Psyr_4659 at 5519.646 kb on + strand, within Psyr_4659 at 5519.646 kb on + strand, within Psyr_4659 at 5519.646 kb on + strand, within Psyr_4659 at 5519.646 kb on + strand, within Psyr_4659 at 5519.647 kb on - strand, within Psyr_4659 at 5519.697 kb on - strand, within Psyr_4659
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Pterin-6-Carboxylic Acid 10 mM remove 5,517,255 + Psyr_4655 0.78 +0.6 5,517,256 - Psyr_4655 0.78 -0.0 5,517,256 - Psyr_4655 0.78 +0.5 5,517,256 - Psyr_4655 0.78 +0.1 5,517,351 + -0.5 5,517,351 + -0.7 5,517,351 + -0.8 5,517,351 + -1.1 5,517,352 - -0.2 5,517,352 - +0.3 5,517,352 - -0.8 5,517,355 + -2.1 5,517,355 + -0.1 5,517,355 + +0.2 5,517,355 + -0.7 5,517,355 + -1.2 5,517,355 + -0.1 5,517,355 + +0.2 5,517,355 + -0.5 5,517,356 - -1.4 5,517,356 - -1.9 5,517,356 - +0.4 5,517,356 - -0.2 5,517,356 - +0.6 5,517,356 - +0.0 5,517,356 - +1.7 5,517,356 - +0.7 5,517,356 - -0.3 5,517,356 - -0.6 5,517,356 - -0.0 5,517,356 - +0.8 5,517,395 + +1.3 5,517,395 + -0.3 5,517,395 + -0.0 5,517,395 + +0.8 5,517,396 - -0.5 5,517,396 - +0.1 5,517,396 - -0.1 5,517,396 - +1.2 5,517,396 - -0.4 5,517,396 - -0.8 5,517,396 - +0.3 5,517,396 - +0.3 5,517,396 - -1.1 5,517,396 - +0.2 5,517,396 - -2.0 5,517,396 - +0.2 5,517,396 - +0.2 5,517,411 + -0.4 5,517,412 - +0.9 5,517,440 + -1.8 5,517,440 + -0.1 5,517,441 - +0.2 5,517,441 - +1.2 5,517,441 - -0.7 5,517,441 - +0.2 5,517,522 + -0.6 5,517,532 + +0.5 5,517,619 - -0.2 5,517,619 - +0.7 5,517,619 - +0.4 5,517,626 + -0.0 5,517,626 + +0.4 5,517,626 + -0.6 5,517,627 - -0.4 5,517,627 - -0.2 5,517,627 - +0.8 5,517,627 - -1.2 5,517,751 + Psyr_4656 0.41 +0.9 5,517,751 + Psyr_4656 0.41 +1.8 5,517,751 + Psyr_4656 0.41 -0.4 5,517,752 - Psyr_4656 0.41 -0.9 5,517,752 - Psyr_4656 0.41 -0.1 5,517,773 - Psyr_4656 0.47 -1.7 5,517,785 + Psyr_4656 0.51 +0.8 5,517,786 - Psyr_4656 0.51 +0.6 5,517,786 - Psyr_4656 0.51 +1.3 5,517,786 - Psyr_4656 0.51 +0.2 5,517,813 + Psyr_4656 0.59 -0.5 5,517,830 + Psyr_4656 0.65 -0.7 5,517,889 + Psyr_4656 0.82 +0.8 5,517,889 + Psyr_4656 0.82 +0.1 5,517,890 - Psyr_4656 0.83 -0.6 5,517,916 + -1.6 5,517,916 + +1.0 5,517,917 - -0.8 5,517,917 - +0.7 5,517,978 + +0.5 5,517,979 - +0.2 5,517,979 - -0.6 5,517,979 - +0.1 5,517,979 - -1.2 5,518,021 + -0.5 5,518,021 + -0.8 5,518,021 + -0.5 5,518,021 + -0.1 5,518,022 - -1.7 5,518,022 - -0.6 5,518,059 - +1.6 5,518,126 + -1.4 5,518,126 + -1.8 5,518,126 + -0.4 5,518,126 + -1.6 5,518,126 + -0.4 5,518,126 + -1.8 5,518,127 - -0.6 5,518,127 - +0.1 5,518,127 - -0.9 5,518,173 + -1.9 5,518,173 + +0.1 5,518,174 - +0.2 5,518,174 - +0.4 5,518,174 - -0.2 5,518,189 + -0.4 5,518,190 - -0.6 5,518,200 + -0.4 5,518,201 - +0.2 5,518,204 + -0.8 5,518,205 - -0.1 5,518,205 - +0.6 5,518,205 - +1.7 5,518,205 - -1.0 5,518,205 - -0.7 5,518,205 - -1.1 5,518,363 - Psyr_4657 0.30 +2.2 5,518,407 + Psyr_4657 0.37 -0.5 5,518,407 + Psyr_4657 0.37 +0.6 5,518,407 + Psyr_4657 0.37 +0.2 5,518,407 + Psyr_4657 0.37 +0.0 5,518,407 + Psyr_4657 0.37 +1.2 5,518,681 - Psyr_4657 0.78 -0.8 5,518,681 - Psyr_4657 0.78 -0.3 5,518,681 - Psyr_4657 0.78 -0.3 5,518,681 - Psyr_4657 0.78 -0.6 5,518,681 - Psyr_4657 0.78 +0.8 5,518,681 - Psyr_4657 0.78 +0.5 5,518,681 - Psyr_4657 0.78 +2.0 5,518,681 - Psyr_4657 0.78 +0.7 5,518,681 - Psyr_4657 0.78 -1.6 5,518,681 - Psyr_4657 0.78 +1.4 5,518,681 - Psyr_4657 0.78 +1.1 5,518,681 - Psyr_4657 0.78 +1.1 5,518,681 - Psyr_4657 0.78 +0.2 5,518,741 + Psyr_4657 0.87 +0.6 5,518,741 + Psyr_4657 0.87 +0.4 5,518,741 + Psyr_4657 0.87 +0.7 5,518,771 + -0.6 5,518,779 + -0.5 5,518,793 - +1.3 5,518,869 + Psyr_4658 0.22 +0.7 5,518,870 - Psyr_4658 0.22 -0.3 5,518,979 - Psyr_4658 0.73 +0.4 5,519,067 + +0.9 5,519,092 + -1.8 5,519,092 + +0.4 5,519,113 + +0.6 5,519,113 + +0.6 5,519,113 + +0.5 5,519,113 + -1.1 5,519,113 + +0.8 5,519,113 + +0.7 5,519,113 + +0.2 5,519,113 + +0.9 5,519,113 + +0.1 5,519,113 + -0.3 5,519,113 + -1.2 5,519,114 - -0.6 5,519,114 - +0.8 5,519,114 - +0.1 5,519,114 - -0.3 5,519,114 - -0.7 5,519,114 - -0.5 5,519,114 - -0.4 5,519,114 - +1.1 5,519,114 - +0.2 5,519,114 - -1.6 5,519,114 - +0.6 5,519,114 - +0.3 5,519,114 - +0.2 5,519,114 - +0.6 5,519,115 + -0.8 5,519,115 + -0.0 5,519,115 + +0.1 5,519,115 + -0.2 5,519,115 + -1.3 5,519,115 + -0.4 5,519,115 + +1.9 5,519,115 + +0.3 5,519,115 + -0.1 5,519,115 + +0.2 5,519,115 + -1.2 5,519,115 + +0.0 5,519,115 + +0.3 5,519,116 - +0.9 5,519,116 - -0.2 5,519,116 - -1.6 5,519,116 - -0.9 5,519,116 - +1.2 5,519,116 - -0.6 5,519,116 - +0.5 5,519,116 - -0.7 5,519,116 - +1.2 5,519,116 - -1.2 5,519,116 - +0.3 5,519,116 - -0.1 5,519,116 - +0.7 5,519,116 - -0.5 5,519,116 - -0.5 5,519,116 - -0.1 5,519,116 - +0.2 5,519,116 - +0.2 5,519,117 + +0.4 5,519,117 + -1.1 5,519,118 - +0.5 5,519,246 + -0.1 5,519,246 + -0.5 5,519,247 - +0.4 5,519,255 - -0.1 5,519,265 - +0.1 5,519,316 + -1.2 5,519,316 + +2.3 5,519,317 - -0.4 5,519,340 - +1.2 5,519,360 + +0.3 5,519,360 + +0.2 5,519,361 - +0.6 5,519,361 - +0.5 5,519,376 - +0.4 5,519,376 - +0.8 5,519,377 + -1.8 5,519,378 - +1.4 5,519,378 - +0.4 5,519,388 + Psyr_4659 0.10 -0.9 5,519,388 + Psyr_4659 0.10 +0.4 5,519,388 + Psyr_4659 0.10 -0.1 5,519,388 + Psyr_4659 0.10 +0.5 5,519,388 + Psyr_4659 0.10 +0.7 5,519,388 + Psyr_4659 0.10 +2.9 5,519,388 + Psyr_4659 0.10 -0.2 5,519,388 + Psyr_4659 0.10 -0.2 5,519,388 + Psyr_4659 0.10 +1.3 5,519,388 + Psyr_4659 0.10 -0.2 5,519,388 + Psyr_4659 0.10 +0.2 5,519,388 + Psyr_4659 0.10 -0.6 5,519,388 + Psyr_4659 0.10 -0.8 5,519,389 - Psyr_4659 0.10 -1.1 5,519,389 - Psyr_4659 0.10 +0.7 5,519,389 - Psyr_4659 0.10 -0.4 5,519,389 - Psyr_4659 0.10 +1.4 5,519,389 - Psyr_4659 0.10 -0.9 5,519,389 - Psyr_4659 0.10 +0.9 5,519,389 - Psyr_4659 0.10 +0.7 5,519,389 - Psyr_4659 0.10 -0.4 5,519,389 - Psyr_4659 0.10 +0.1 5,519,389 - Psyr_4659 0.10 -0.3 5,519,389 - Psyr_4659 0.10 +0.3 5,519,389 - Psyr_4659 0.10 +0.2 5,519,389 - Psyr_4659 0.10 -2.0 5,519,389 - Psyr_4659 0.10 -0.9 5,519,435 + Psyr_4659 0.13 +0.3 5,519,564 + Psyr_4659 0.22 +0.5 5,519,565 - Psyr_4659 0.22 -1.1 5,519,565 - Psyr_4659 0.22 -0.1 5,519,565 - Psyr_4659 0.22 -0.2 5,519,565 - Psyr_4659 0.22 -1.8 5,519,574 + Psyr_4659 0.22 +0.1 5,519,574 + Psyr_4659 0.22 +0.0 5,519,575 - Psyr_4659 0.22 +0.4 5,519,575 - Psyr_4659 0.22 -0.7 5,519,575 - Psyr_4659 0.22 +1.5 5,519,624 + Psyr_4659 0.25 -0.1 5,519,625 - Psyr_4659 0.26 -0.6 5,519,625 - Psyr_4659 0.26 -0.5 5,519,625 - Psyr_4659 0.26 +0.2 5,519,625 - Psyr_4659 0.26 +1.8 5,519,625 - Psyr_4659 0.26 -1.2 5,519,646 + Psyr_4659 0.27 +0.4 5,519,646 + Psyr_4659 0.27 -0.0 5,519,646 + Psyr_4659 0.27 -0.2 5,519,646 + Psyr_4659 0.27 -0.6 5,519,647 - Psyr_4659 0.27 -0.1 5,519,697 - Psyr_4659 0.30 -0.2
Or see this region's nucleotide sequence