Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5008

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5007 and Psyr_5008 are separated by 318 nucleotidesPsyr_5008 and Psyr_5009 are separated by 818 nucleotides Psyr_5007: Psyr_5007 - Aldo/keto reductase, at 5,939,010 to 5,940,017 _5007 Psyr_5008: Psyr_5008 - transcriptional regulator, GntR family, at 5,940,336 to 5,941,073 _5008 Psyr_5009: Psyr_5009 - conserved hypothetical protein, at 5,941,892 to 5,942,668 _5009 Position (kb) 5940 5941 5942Strain fitness (log2 ratio) -2 -1 0 1 2at 5939.346 kb on + strand, within Psyr_5007at 5939.347 kb on - strand, within Psyr_5007at 5939.347 kb on - strand, within Psyr_5007at 5939.347 kb on - strand, within Psyr_5007at 5939.354 kb on + strand, within Psyr_5007at 5939.355 kb on - strand, within Psyr_5007at 5939.355 kb on - strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.361 kb on + strand, within Psyr_5007at 5939.361 kb on + strand, within Psyr_5007at 5939.361 kb on + strand, within Psyr_5007at 5939.362 kb on - strand, within Psyr_5007at 5939.436 kb on - strand, within Psyr_5007at 5939.544 kb on + strand, within Psyr_5007at 5939.544 kb on + strand, within Psyr_5007at 5939.544 kb on + strand, within Psyr_5007at 5939.544 kb on + strand, within Psyr_5007at 5939.545 kb on - strand, within Psyr_5007at 5939.619 kb on + strand, within Psyr_5007at 5939.619 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.652 kb on - strand, within Psyr_5007at 5939.652 kb on - strand, within Psyr_5007at 5939.652 kb on - strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.656 kb on - strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.883 kb on + strand, within Psyr_5007at 5939.883 kb on + strand, within Psyr_5007at 5939.884 kb on - strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.886 kb on - strand, within Psyr_5007at 5939.886 kb on - strand, within Psyr_5007at 5939.886 kb on - strand, within Psyr_5007at 5939.886 kb on - strand, within Psyr_5007at 5939.886 kb on - strand, within Psyr_5007at 5939.886 kb on - strand, within Psyr_5007at 5940.096 kb on + strandat 5940.097 kb on - strandat 5940.131 kb on + strandat 5940.131 kb on + strandat 5940.131 kb on + strandat 5940.132 kb on - strandat 5940.132 kb on - strandat 5940.143 kb on - strandat 5940.162 kb on + strandat 5940.167 kb on + strandat 5940.167 kb on + strandat 5940.167 kb on + strandat 5940.168 kb on - strandat 5940.168 kb on - strandat 5940.168 kb on - strandat 5940.168 kb on - strandat 5940.175 kb on + strandat 5940.175 kb on + strandat 5940.176 kb on - strandat 5940.176 kb on - strandat 5940.176 kb on - strandat 5940.176 kb on - strandat 5940.176 kb on - strandat 5940.176 kb on - strandat 5940.176 kb on - strandat 5940.240 kb on + strandat 5940.241 kb on - strandat 5940.241 kb on - strandat 5940.241 kb on - strandat 5940.329 kb on + strandat 5940.330 kb on - strandat 5940.330 kb on - strandat 5940.350 kb on + strandat 5940.350 kb on + strandat 5940.351 kb on - strandat 5940.443 kb on + strand, within Psyr_5008at 5940.627 kb on + strand, within Psyr_5008at 5940.628 kb on - strand, within Psyr_5008at 5940.640 kb on + strand, within Psyr_5008at 5940.640 kb on + strand, within Psyr_5008at 5940.640 kb on + strand, within Psyr_5008at 5940.641 kb on - strand, within Psyr_5008at 5940.641 kb on - strand, within Psyr_5008at 5940.714 kb on + strand, within Psyr_5008at 5940.714 kb on + strand, within Psyr_5008at 5940.714 kb on + strand, within Psyr_5008at 5940.714 kb on + strand, within Psyr_5008at 5940.715 kb on - strand, within Psyr_5008at 5940.789 kb on + strand, within Psyr_5008at 5940.789 kb on + strand, within Psyr_5008at 5940.790 kb on - strand, within Psyr_5008at 5940.790 kb on - strand, within Psyr_5008at 5940.790 kb on - strand, within Psyr_5008at 5941.167 kb on - strandat 5941.198 kb on + strandat 5941.204 kb on + strandat 5941.204 kb on + strandat 5941.204 kb on + strandat 5941.205 kb on - strandat 5941.491 kb on - strandat 5941.589 kb on - strandat 5941.802 kb on - strandat 5941.805 kb on - strandat 5941.977 kb on + strand, within Psyr_5009at 5941.977 kb on + strand, within Psyr_5009at 5941.991 kb on - strand, within Psyr_5009at 5942.004 kb on + strand, within Psyr_5009at 5942.004 kb on + strand, within Psyr_5009at 5942.005 kb on - strand, within Psyr_5009at 5942.005 kb on - strand, within Psyr_5009

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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5,939,346 + Psyr_5007 0.33 -0.9
5,939,347 - Psyr_5007 0.33 -1.1
5,939,347 - Psyr_5007 0.33 -0.0
5,939,347 - Psyr_5007 0.33 -0.7
5,939,354 + Psyr_5007 0.34 -0.1
5,939,355 - Psyr_5007 0.34 -1.6
5,939,355 - Psyr_5007 0.34 -0.2
5,939,358 + Psyr_5007 0.35 +0.2
5,939,358 + Psyr_5007 0.35 +1.0
5,939,358 + Psyr_5007 0.35 +0.3
5,939,358 + Psyr_5007 0.35 +0.2
5,939,358 + Psyr_5007 0.35 -0.6
5,939,358 + Psyr_5007 0.35 -0.7
5,939,358 + Psyr_5007 0.35 +0.3
5,939,358 + Psyr_5007 0.35 -0.1
5,939,358 + Psyr_5007 0.35 +1.1
5,939,358 + Psyr_5007 0.35 +1.4
5,939,358 + Psyr_5007 0.35 +0.5
5,939,358 + Psyr_5007 0.35 +0.3
5,939,358 + Psyr_5007 0.35 +0.9
5,939,358 + Psyr_5007 0.35 +1.0
5,939,358 + Psyr_5007 0.35 -0.1
5,939,358 + Psyr_5007 0.35 -0.5
5,939,358 + Psyr_5007 0.35 +1.4
5,939,358 + Psyr_5007 0.35 +0.7
5,939,358 + Psyr_5007 0.35 +0.4
5,939,358 + Psyr_5007 0.35 +1.2
5,939,359 - Psyr_5007 0.35 -1.4
5,939,359 - Psyr_5007 0.35 -1.3
5,939,359 - Psyr_5007 0.35 -1.4
5,939,359 - Psyr_5007 0.35 +0.2
5,939,359 - Psyr_5007 0.35 +1.4
5,939,359 - Psyr_5007 0.35 -0.2
5,939,359 - Psyr_5007 0.35 -0.3
5,939,359 - Psyr_5007 0.35 +0.0
5,939,359 - Psyr_5007 0.35 +0.0
5,939,359 - Psyr_5007 0.35 +2.4
5,939,359 - Psyr_5007 0.35 -0.1
5,939,359 - Psyr_5007 0.35 +0.2
5,939,359 - Psyr_5007 0.35 -0.9
5,939,359 - Psyr_5007 0.35 +0.9
5,939,359 - Psyr_5007 0.35 +1.4
5,939,359 - Psyr_5007 0.35 -0.2
5,939,359 - Psyr_5007 0.35 +0.6
5,939,359 - Psyr_5007 0.35 -1.2
5,939,359 - Psyr_5007 0.35 +0.3
5,939,359 - Psyr_5007 0.35 +0.1
5,939,359 - Psyr_5007 0.35 +0.3
5,939,359 - Psyr_5007 0.35 -0.4
5,939,359 - Psyr_5007 0.35 -0.6
5,939,361 + Psyr_5007 0.35 -0.5
5,939,361 + Psyr_5007 0.35 -0.1
5,939,361 + Psyr_5007 0.35 +0.4
5,939,362 - Psyr_5007 0.35 +0.2
5,939,436 - Psyr_5007 0.42 -1.4
5,939,544 + Psyr_5007 0.53 -1.2
5,939,544 + Psyr_5007 0.53 +1.4
5,939,544 + Psyr_5007 0.53 +0.4
5,939,544 + Psyr_5007 0.53 +0.1
5,939,545 - Psyr_5007 0.53 -0.1
5,939,619 + Psyr_5007 0.60 -1.0
5,939,619 + Psyr_5007 0.60 +1.0
5,939,651 + Psyr_5007 0.64 -0.2
5,939,651 + Psyr_5007 0.64 +0.1
5,939,651 + Psyr_5007 0.64 +1.3
5,939,651 + Psyr_5007 0.64 +1.1
5,939,651 + Psyr_5007 0.64 +0.6
5,939,651 + Psyr_5007 0.64 +0.7
5,939,651 + Psyr_5007 0.64 +0.8
5,939,651 + Psyr_5007 0.64 -0.1
5,939,651 + Psyr_5007 0.64 +1.0
5,939,652 - Psyr_5007 0.64 +0.1
5,939,652 - Psyr_5007 0.64 +2.0
5,939,652 - Psyr_5007 0.64 +0.4
5,939,655 + Psyr_5007 0.64 -0.1
5,939,655 + Psyr_5007 0.64 +1.0
5,939,655 + Psyr_5007 0.64 +1.2
5,939,655 + Psyr_5007 0.64 +0.4
5,939,655 + Psyr_5007 0.64 +0.7
5,939,655 + Psyr_5007 0.64 +0.9
5,939,655 + Psyr_5007 0.64 -0.9
5,939,655 + Psyr_5007 0.64 +0.6
5,939,656 - Psyr_5007 0.64 -1.3
5,939,769 + Psyr_5007 0.75 +0.3
5,939,769 + Psyr_5007 0.75 -1.4
5,939,769 + Psyr_5007 0.75 -0.2
5,939,769 + Psyr_5007 0.75 +0.3
5,939,769 + Psyr_5007 0.75 -0.2
5,939,769 + Psyr_5007 0.75 +0.2
5,939,769 + Psyr_5007 0.75 +1.2
5,939,769 + Psyr_5007 0.75 +0.1
5,939,769 + Psyr_5007 0.75 +0.4
5,939,769 + Psyr_5007 0.75 +0.2
5,939,769 + Psyr_5007 0.75 +1.2
5,939,769 + Psyr_5007 0.75 +0.8
5,939,769 + Psyr_5007 0.75 -1.0
5,939,770 - Psyr_5007 0.75 -1.1
5,939,770 - Psyr_5007 0.75 -0.9
5,939,770 - Psyr_5007 0.75 -0.0
5,939,770 - Psyr_5007 0.75 -1.5
5,939,770 - Psyr_5007 0.75 -1.8
5,939,770 - Psyr_5007 0.75 +1.0
5,939,770 - Psyr_5007 0.75 -0.6
5,939,770 - Psyr_5007 0.75 +0.0
5,939,770 - Psyr_5007 0.75 +0.1
5,939,883 + Psyr_5007 0.87 +1.1
5,939,883 + Psyr_5007 0.87 -0.1
5,939,884 - Psyr_5007 0.87 -0.1
5,939,885 + Psyr_5007 0.87 +1.6
5,939,885 + Psyr_5007 0.87 +0.3
5,939,885 + Psyr_5007 0.87 +0.7
5,939,885 + Psyr_5007 0.87 -0.5
5,939,885 + Psyr_5007 0.87 +0.6
5,939,885 + Psyr_5007 0.87 +0.2
5,939,885 + Psyr_5007 0.87 +0.8
5,939,886 - Psyr_5007 0.87 -0.1
5,939,886 - Psyr_5007 0.87 +0.8
5,939,886 - Psyr_5007 0.87 +1.4
5,939,886 - Psyr_5007 0.87 +0.6
5,939,886 - Psyr_5007 0.87 -2.0
5,939,886 - Psyr_5007 0.87 +0.5
5,940,096 + +0.4
5,940,097 - +0.1
5,940,131 + -1.1
5,940,131 + +1.2
5,940,131 + +1.2
5,940,132 - -1.1
5,940,132 - -1.0
5,940,143 - -0.3
5,940,162 + +0.6
5,940,167 + +0.8
5,940,167 + +0.9
5,940,167 + +0.6
5,940,168 - -0.0
5,940,168 - +1.2
5,940,168 - +0.2
5,940,168 - -0.4
5,940,175 + +0.2
5,940,175 + -0.2
5,940,176 - +0.5
5,940,176 - +0.0
5,940,176 - +0.4
5,940,176 - +0.7
5,940,176 - -0.7
5,940,176 - +1.4
5,940,176 - +0.1
5,940,240 + +0.7
5,940,241 - -0.8
5,940,241 - -0.9
5,940,241 - -0.0
5,940,329 + +0.3
5,940,330 - -0.7
5,940,330 - -0.2
5,940,350 + +0.4
5,940,350 + +0.6
5,940,351 - +0.3
5,940,443 + Psyr_5008 0.14 +0.4
5,940,627 + Psyr_5008 0.39 +0.9
5,940,628 - Psyr_5008 0.40 -0.8
5,940,640 + Psyr_5008 0.41 -0.0
5,940,640 + Psyr_5008 0.41 +0.3
5,940,640 + Psyr_5008 0.41 -0.3
5,940,641 - Psyr_5008 0.41 -1.7
5,940,641 - Psyr_5008 0.41 -1.6
5,940,714 + Psyr_5008 0.51 -0.9
5,940,714 + Psyr_5008 0.51 -0.8
5,940,714 + Psyr_5008 0.51 -0.6
5,940,714 + Psyr_5008 0.51 -1.2
5,940,715 - Psyr_5008 0.51 -0.6
5,940,789 + Psyr_5008 0.61 +0.2
5,940,789 + Psyr_5008 0.61 +0.5
5,940,790 - Psyr_5008 0.62 +0.1
5,940,790 - Psyr_5008 0.62 -1.1
5,940,790 - Psyr_5008 0.62 -0.4
5,941,167 - -0.5
5,941,198 + -0.6
5,941,204 + -0.3
5,941,204 + -2.7
5,941,204 + -0.1
5,941,205 - -0.4
5,941,491 - -0.1
5,941,589 - -1.0
5,941,802 - +1.4
5,941,805 - -0.8
5,941,977 + Psyr_5009 0.11 +0.4
5,941,977 + Psyr_5009 0.11 -0.5
5,941,991 - Psyr_5009 0.13 -0.4
5,942,004 + Psyr_5009 0.14 -1.7
5,942,004 + Psyr_5009 0.14 +0.4
5,942,005 - Psyr_5009 0.15 -2.1
5,942,005 - Psyr_5009 0.15 -0.1

Or see this region's nucleotide sequence