Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4692 and Psyr_4693 overlap by 4 nucleotides Psyr_4693 and Psyr_4694 overlap by 4 nucleotides Psyr_4694 and Psyr_4695 overlap by 1 nucleotides Psyr_4695 and Psyr_4696 overlap by 17 nucleotides
Psyr_4692: Psyr_4692 - ABC transporter, at 5,560,754 to 5,561,785
_4692
Psyr_4693: Psyr_4693 - Binding-protein-dependent transport systems inner membrane component, at 5,561,782 to 5,562,576
_4693
Psyr_4694: Psyr_4694 - Binding-protein-dependent transport systems inner membrane component, at 5,562,573 to 5,563,442
_4694
Psyr_4695: Psyr_4695 - extracellular solute-binding protein, family 1, at 5,563,442 to 5,564,443
_4695
Psyr_4696: Psyr_4696 - transcriptional regulator, LacI family, at 5,564,427 to 5,565,446
_4696
Position (kb) 5562
5563
5564 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5561.720 kb on + strand at 5561.720 kb on + strand at 5561.721 kb on - strand at 5561.870 kb on + strand, within Psyr_4693 at 5561.870 kb on + strand, within Psyr_4693 at 5561.870 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5562.030 kb on + strand, within Psyr_4693 at 5562.030 kb on + strand, within Psyr_4693 at 5562.030 kb on + strand, within Psyr_4693 at 5562.031 kb on - strand, within Psyr_4693 at 5562.218 kb on + strand, within Psyr_4693 at 5562.326 kb on + strand, within Psyr_4693 at 5562.408 kb on - strand, within Psyr_4693 at 5562.468 kb on - strand, within Psyr_4693 at 5562.593 kb on + strand at 5562.602 kb on + strand at 5562.602 kb on + strand at 5562.603 kb on - strand at 5562.682 kb on + strand, within Psyr_4694 at 5562.700 kb on + strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.943 kb on + strand, within Psyr_4694 at 5562.943 kb on + strand, within Psyr_4694 at 5562.943 kb on + strand, within Psyr_4694 at 5562.943 kb on + strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5562.944 kb on - strand, within Psyr_4694 at 5563.231 kb on + strand, within Psyr_4694 at 5563.231 kb on + strand, within Psyr_4694 at 5563.232 kb on - strand, within Psyr_4694 at 5563.232 kb on - strand, within Psyr_4694 at 5563.281 kb on - strand, within Psyr_4694 at 5563.338 kb on + strand, within Psyr_4694 at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.461 kb on + strand at 5563.593 kb on + strand, within Psyr_4695 at 5563.593 kb on + strand, within Psyr_4695 at 5563.594 kb on - strand, within Psyr_4695 at 5563.594 kb on - strand, within Psyr_4695 at 5563.696 kb on - strand, within Psyr_4695 at 5563.782 kb on + strand, within Psyr_4695 at 5563.824 kb on + strand, within Psyr_4695 at 5563.825 kb on - strand, within Psyr_4695 at 5563.875 kb on + strand, within Psyr_4695 at 5563.876 kb on - strand, within Psyr_4695 at 5563.876 kb on - strand, within Psyr_4695 at 5563.944 kb on + strand, within Psyr_4695 at 5563.992 kb on + strand, within Psyr_4695 at 5563.992 kb on + strand, within Psyr_4695 at 5563.992 kb on + strand, within Psyr_4695 at 5563.992 kb on + strand, within Psyr_4695 at 5563.993 kb on - strand, within Psyr_4695 at 5563.993 kb on - strand, within Psyr_4695 at 5564.151 kb on + strand, within Psyr_4695 at 5564.151 kb on + strand, within Psyr_4695 at 5564.151 kb on + strand, within Psyr_4695 at 5564.151 kb on + strand, within Psyr_4695 at 5564.152 kb on - strand, within Psyr_4695 at 5564.152 kb on - strand, within Psyr_4695 at 5564.152 kb on - strand, within Psyr_4695 at 5564.152 kb on - strand, within Psyr_4695 at 5564.152 kb on - strand, within Psyr_4695 at 5564.152 kb on - strand, within Psyr_4695 at 5564.203 kb on - strand, within Psyr_4695 at 5564.205 kb on + strand, within Psyr_4695 at 5564.205 kb on + strand, within Psyr_4695 at 5564.205 kb on + strand, within Psyr_4695 at 5564.205 kb on + strand, within Psyr_4695 at 5564.206 kb on - strand, within Psyr_4695 at 5564.206 kb on - strand, within Psyr_4695 at 5564.206 kb on - strand, within Psyr_4695 at 5564.358 kb on + strand at 5564.359 kb on - strand at 5564.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 5,561,720 + +0.1 5,561,720 + -0.2 5,561,721 - +0.3 5,561,870 + Psyr_4693 0.11 -0.5 5,561,870 + Psyr_4693 0.11 +1.3 5,561,870 + Psyr_4693 0.11 +0.4 5,561,903 + Psyr_4693 0.15 -0.0 5,561,903 + Psyr_4693 0.15 -1.7 5,561,903 + Psyr_4693 0.15 -0.1 5,561,903 + Psyr_4693 0.15 +0.8 5,562,030 + Psyr_4693 0.31 +0.5 5,562,030 + Psyr_4693 0.31 -1.4 5,562,030 + Psyr_4693 0.31 -1.7 5,562,031 - Psyr_4693 0.31 +0.3 5,562,218 + Psyr_4693 0.55 -0.5 5,562,326 + Psyr_4693 0.68 -0.1 5,562,408 - Psyr_4693 0.79 +1.1 5,562,468 - Psyr_4693 0.86 +0.4 5,562,593 + +0.1 5,562,602 + -0.4 5,562,602 + -0.1 5,562,603 - -0.5 5,562,682 + Psyr_4694 0.13 +0.4 5,562,700 + Psyr_4694 0.15 -0.5 5,562,701 - Psyr_4694 0.15 -0.9 5,562,701 - Psyr_4694 0.15 -0.0 5,562,701 - Psyr_4694 0.15 -1.1 5,562,701 - Psyr_4694 0.15 +0.1 5,562,701 - Psyr_4694 0.15 -0.3 5,562,701 - Psyr_4694 0.15 +0.6 5,562,943 + Psyr_4694 0.43 +0.4 5,562,943 + Psyr_4694 0.43 -0.3 5,562,943 + Psyr_4694 0.43 +1.3 5,562,943 + Psyr_4694 0.43 -0.2 5,562,944 - Psyr_4694 0.43 +0.4 5,562,944 - Psyr_4694 0.43 +0.7 5,562,944 - Psyr_4694 0.43 -0.1 5,562,944 - Psyr_4694 0.43 +0.2 5,562,944 - Psyr_4694 0.43 +0.6 5,562,944 - Psyr_4694 0.43 +0.8 5,562,944 - Psyr_4694 0.43 +0.7 5,562,944 - Psyr_4694 0.43 -0.6 5,563,231 + Psyr_4694 0.76 +1.2 5,563,231 + Psyr_4694 0.76 -0.6 5,563,232 - Psyr_4694 0.76 +0.4 5,563,232 - Psyr_4694 0.76 +0.2 5,563,281 - Psyr_4694 0.81 +0.8 5,563,338 + Psyr_4694 0.88 -0.3 5,563,443 + +1.3 5,563,443 + +0.1 5,563,443 + +0.7 5,563,443 + +0.9 5,563,443 + +0.4 5,563,443 + -0.3 5,563,443 + -0.0 5,563,444 - -0.1 5,563,444 - +0.1 5,563,444 - +0.1 5,563,444 - -0.2 5,563,444 - +0.3 5,563,444 - +0.3 5,563,444 - -0.3 5,563,444 - -0.7 5,563,461 + -0.3 5,563,593 + Psyr_4695 0.15 +0.5 5,563,593 + Psyr_4695 0.15 +0.1 5,563,594 - Psyr_4695 0.15 +1.1 5,563,594 - Psyr_4695 0.15 +0.5 5,563,696 - Psyr_4695 0.25 -1.1 5,563,782 + Psyr_4695 0.34 -3.3 5,563,824 + Psyr_4695 0.38 +1.3 5,563,825 - Psyr_4695 0.38 -0.9 5,563,875 + Psyr_4695 0.43 +0.1 5,563,876 - Psyr_4695 0.43 +0.5 5,563,876 - Psyr_4695 0.43 +0.9 5,563,944 + Psyr_4695 0.50 +0.7 5,563,992 + Psyr_4695 0.55 +0.3 5,563,992 + Psyr_4695 0.55 -1.9 5,563,992 + Psyr_4695 0.55 -0.2 5,563,992 + Psyr_4695 0.55 -1.6 5,563,993 - Psyr_4695 0.55 -0.5 5,563,993 - Psyr_4695 0.55 -0.9 5,564,151 + Psyr_4695 0.71 +1.5 5,564,151 + Psyr_4695 0.71 +0.1 5,564,151 + Psyr_4695 0.71 -0.1 5,564,151 + Psyr_4695 0.71 -0.0 5,564,152 - Psyr_4695 0.71 -1.5 5,564,152 - Psyr_4695 0.71 +0.2 5,564,152 - Psyr_4695 0.71 -0.8 5,564,152 - Psyr_4695 0.71 +0.7 5,564,152 - Psyr_4695 0.71 +1.5 5,564,152 - Psyr_4695 0.71 +0.3 5,564,203 - Psyr_4695 0.76 +0.7 5,564,205 + Psyr_4695 0.76 -0.6 5,564,205 + Psyr_4695 0.76 -0.6 5,564,205 + Psyr_4695 0.76 +2.2 5,564,205 + Psyr_4695 0.76 -2.1 5,564,206 - Psyr_4695 0.76 +0.4 5,564,206 - Psyr_4695 0.76 -0.4 5,564,206 - Psyr_4695 0.76 +0.8 5,564,358 + +0.3 5,564,359 - -1.4 5,564,429 - -0.6
Or see this region's nucleotide sequence