Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4259 and Psyr_4260 are separated by 276 nucleotides Psyr_4260 and Psyr_4261 are separated by 62 nucleotides
Psyr_4259: Psyr_4259 - ATP-dependent protease, putative, at 5,075,180 to 5,077,615
_4259
Psyr_4260: Psyr_4260 - conserved hypothetical protein, at 5,077,892 to 5,078,380
_4260
Psyr_4261: Psyr_4261 - conserved hypothetical protein, at 5,078,443 to 5,080,296
_4261
Position (kb) 5077
5078
5079 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5076.979 kb on + strand, within Psyr_4259 at 5076.979 kb on + strand, within Psyr_4259 at 5076.979 kb on + strand, within Psyr_4259 at 5076.980 kb on - strand, within Psyr_4259 at 5076.980 kb on - strand, within Psyr_4259 at 5076.980 kb on - strand, within Psyr_4259 at 5077.089 kb on + strand, within Psyr_4259 at 5077.090 kb on - strand, within Psyr_4259 at 5077.147 kb on - strand, within Psyr_4259 at 5077.192 kb on - strand, within Psyr_4259 at 5077.276 kb on + strand, within Psyr_4259 at 5077.276 kb on + strand, within Psyr_4259 at 5077.276 kb on + strand, within Psyr_4259 at 5077.276 kb on + strand, within Psyr_4259 at 5077.332 kb on + strand, within Psyr_4259 at 5077.332 kb on + strand, within Psyr_4259 at 5077.333 kb on - strand, within Psyr_4259 at 5077.333 kb on - strand, within Psyr_4259 at 5077.438 kb on - strand at 5077.438 kb on - strand at 5077.479 kb on - strand at 5077.589 kb on + strand at 5077.590 kb on - strand at 5077.590 kb on - strand at 5077.619 kb on + strand at 5077.619 kb on + strand at 5077.620 kb on - strand at 5077.626 kb on + strand at 5077.626 kb on + strand at 5077.626 kb on + strand at 5077.627 kb on - strand at 5077.627 kb on - strand at 5077.627 kb on - strand at 5077.627 kb on - strand at 5077.627 kb on - strand at 5077.627 kb on - strand at 5077.667 kb on + strand at 5077.756 kb on + strand at 5077.757 kb on - strand at 5077.757 kb on - strand at 5077.842 kb on + strand at 5077.842 kb on + strand at 5077.842 kb on + strand at 5077.875 kb on + strand at 5077.876 kb on - strand at 5077.891 kb on + strand at 5077.942 kb on + strand, within Psyr_4260 at 5077.942 kb on + strand, within Psyr_4260 at 5078.044 kb on + strand, within Psyr_4260 at 5078.045 kb on - strand, within Psyr_4260 at 5078.115 kb on - strand, within Psyr_4260 at 5078.115 kb on - strand, within Psyr_4260 at 5078.115 kb on - strand, within Psyr_4260 at 5078.115 kb on - strand, within Psyr_4260 at 5078.122 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.378 kb on + strand at 5078.379 kb on - strand at 5078.379 kb on - strand at 5078.431 kb on + strand at 5078.432 kb on - strand at 5078.442 kb on + strand at 5078.442 kb on + strand at 5078.443 kb on - strand at 5078.443 kb on - strand at 5078.443 kb on - strand at 5078.443 kb on - strand at 5078.443 kb on - strand at 5078.599 kb on + strand at 5078.599 kb on + strand at 5078.599 kb on + strand at 5078.600 kb on - strand at 5078.600 kb on - strand at 5078.600 kb on - strand at 5078.600 kb on - strand at 5078.683 kb on + strand, within Psyr_4261 at 5078.723 kb on + strand, within Psyr_4261 at 5078.723 kb on + strand, within Psyr_4261 at 5078.724 kb on - strand, within Psyr_4261 at 5078.724 kb on - strand, within Psyr_4261 at 5078.737 kb on - strand, within Psyr_4261 at 5078.810 kb on - strand, within Psyr_4261 at 5078.947 kb on + strand, within Psyr_4261 at 5078.948 kb on - strand, within Psyr_4261 at 5078.968 kb on + strand, within Psyr_4261 at 5078.968 kb on + strand, within Psyr_4261 at 5078.969 kb on - strand, within Psyr_4261 at 5078.969 kb on - strand, within Psyr_4261 at 5079.184 kb on + strand, within Psyr_4261 at 5079.184 kb on + strand, within Psyr_4261 at 5079.185 kb on - strand, within Psyr_4261 at 5079.185 kb on - strand, within Psyr_4261 at 5079.185 kb on - strand, within Psyr_4261 at 5079.335 kb on + strand, within Psyr_4261 at 5079.335 kb on + strand, within Psyr_4261 at 5079.335 kb on + strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 5,076,979 + Psyr_4259 0.74 -1.6 5,076,979 + Psyr_4259 0.74 +0.9 5,076,979 + Psyr_4259 0.74 -0.1 5,076,980 - Psyr_4259 0.74 -1.3 5,076,980 - Psyr_4259 0.74 -1.0 5,076,980 - Psyr_4259 0.74 +1.0 5,077,089 + Psyr_4259 0.78 +0.2 5,077,090 - Psyr_4259 0.78 -0.9 5,077,147 - Psyr_4259 0.81 -1.4 5,077,192 - Psyr_4259 0.83 -1.3 5,077,276 + Psyr_4259 0.86 +0.1 5,077,276 + Psyr_4259 0.86 -0.6 5,077,276 + Psyr_4259 0.86 -0.1 5,077,276 + Psyr_4259 0.86 +0.9 5,077,332 + Psyr_4259 0.88 +0.3 5,077,332 + Psyr_4259 0.88 -0.7 5,077,333 - Psyr_4259 0.88 +0.7 5,077,333 - Psyr_4259 0.88 -1.3 5,077,438 - +0.8 5,077,438 - +0.3 5,077,479 - -0.5 5,077,589 + -0.2 5,077,590 - +0.0 5,077,590 - -1.1 5,077,619 + -1.3 5,077,619 + +0.2 5,077,620 - -1.3 5,077,626 + -0.1 5,077,626 + +0.2 5,077,626 + -0.8 5,077,627 - -1.1 5,077,627 - -2.1 5,077,627 - +0.2 5,077,627 - +0.8 5,077,627 - +0.7 5,077,627 - -2.4 5,077,667 + +0.2 5,077,756 + -0.6 5,077,757 - +1.2 5,077,757 - +0.4 5,077,842 + +0.4 5,077,842 + +0.2 5,077,842 + +0.5 5,077,875 + +0.3 5,077,876 - +0.7 5,077,891 + +0.6 5,077,942 + Psyr_4260 0.10 -0.6 5,077,942 + Psyr_4260 0.10 +0.5 5,078,044 + Psyr_4260 0.31 -0.1 5,078,045 - Psyr_4260 0.31 +0.7 5,078,115 - Psyr_4260 0.46 +1.1 5,078,115 - Psyr_4260 0.46 -1.4 5,078,115 - Psyr_4260 0.46 +0.0 5,078,115 - Psyr_4260 0.46 -0.5 5,078,122 + Psyr_4260 0.47 +0.7 5,078,204 + Psyr_4260 0.64 -0.6 5,078,204 + Psyr_4260 0.64 -0.4 5,078,204 + Psyr_4260 0.64 -0.3 5,078,204 + Psyr_4260 0.64 +0.2 5,078,204 + Psyr_4260 0.64 -0.6 5,078,204 + Psyr_4260 0.64 -1.3 5,078,204 + Psyr_4260 0.64 -0.8 5,078,204 + Psyr_4260 0.64 -0.6 5,078,205 - Psyr_4260 0.64 -0.5 5,078,205 - Psyr_4260 0.64 -1.1 5,078,205 - Psyr_4260 0.64 +0.1 5,078,205 - Psyr_4260 0.64 -0.3 5,078,205 - Psyr_4260 0.64 -0.5 5,078,205 - Psyr_4260 0.64 +0.1 5,078,363 + +0.3 5,078,363 + -1.6 5,078,363 + +1.2 5,078,363 + -0.1 5,078,363 + +0.1 5,078,363 + +0.5 5,078,363 + -0.4 5,078,364 - +0.4 5,078,364 - -0.9 5,078,364 - -0.1 5,078,364 - +0.3 5,078,364 - +1.2 5,078,364 - +0.3 5,078,378 + -0.6 5,078,379 - +0.0 5,078,379 - -0.5 5,078,431 + +0.9 5,078,432 - -0.7 5,078,442 + +0.0 5,078,442 + +0.1 5,078,443 - +0.2 5,078,443 - -0.3 5,078,443 - +0.5 5,078,443 - +0.6 5,078,443 - +1.7 5,078,599 + +1.1 5,078,599 + -0.3 5,078,599 + -0.1 5,078,600 - -0.2 5,078,600 - -0.2 5,078,600 - +0.2 5,078,600 - -0.6 5,078,683 + Psyr_4261 0.13 +0.8 5,078,723 + Psyr_4261 0.15 +0.7 5,078,723 + Psyr_4261 0.15 +0.7 5,078,724 - Psyr_4261 0.15 -1.9 5,078,724 - Psyr_4261 0.15 +0.2 5,078,737 - Psyr_4261 0.16 -0.1 5,078,810 - Psyr_4261 0.20 +2.8 5,078,947 + Psyr_4261 0.27 -0.8 5,078,948 - Psyr_4261 0.27 +0.8 5,078,968 + Psyr_4261 0.28 +0.5 5,078,968 + Psyr_4261 0.28 -0.4 5,078,969 - Psyr_4261 0.28 -0.2 5,078,969 - Psyr_4261 0.28 +0.2 5,079,184 + Psyr_4261 0.40 -1.0 5,079,184 + Psyr_4261 0.40 +1.2 5,079,185 - Psyr_4261 0.40 -0.0 5,079,185 - Psyr_4261 0.40 -0.7 5,079,185 - Psyr_4261 0.40 -0.6 5,079,335 + Psyr_4261 0.48 +0.3 5,079,335 + Psyr_4261 0.48 +1.0 5,079,335 + Psyr_4261 0.48 +0.0 5,079,336 - Psyr_4261 0.48 -0.2 5,079,336 - Psyr_4261 0.48 +0.0 5,079,336 - Psyr_4261 0.48 -1.1 5,079,336 - Psyr_4261 0.48 +1.0 5,079,336 - Psyr_4261 0.48 +0.7 5,079,336 - Psyr_4261 0.48 -1.1 5,079,336 - Psyr_4261 0.48 +0.0 5,079,336 - Psyr_4261 0.48 +1.2 5,079,336 - Psyr_4261 0.48 +0.4 5,079,336 - Psyr_4261 0.48 +1.4 5,079,336 - Psyr_4261 0.48 -0.1
Or see this region's nucleotide sequence