Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2937 and Psyr_2938 are separated by 139 nucleotides Psyr_2938 and Psyr_2939 are separated by 63 nucleotides
Psyr_2937: Psyr_2937 - NADH:flavin oxidoreductase/NADH oxidase, at 3,524,525 to 3,525,622
_2937
Psyr_2938: Psyr_2938 - transcriptional regulator, LysR family, at 3,525,762 to 3,526,646
_2938
Psyr_2939: Psyr_2939 - response regulator receiver modulated diguanylate cyclase, at 3,526,710 to 3,527,666
_2939
Position (kb)
3525
3526
3527 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3524.823 kb on + strand, within Psyr_2937 at 3524.823 kb on + strand, within Psyr_2937 at 3524.823 kb on + strand, within Psyr_2937 at 3524.823 kb on + strand, within Psyr_2937 at 3524.823 kb on + strand, within Psyr_2937 at 3524.824 kb on - strand, within Psyr_2937 at 3524.824 kb on - strand, within Psyr_2937 at 3524.824 kb on - strand, within Psyr_2937 at 3525.083 kb on + strand at 3525.083 kb on + strand, within Psyr_2937 at 3525.083 kb on + strand, within Psyr_2937 at 3525.083 kb on + strand, within Psyr_2937 at 3525.083 kb on + strand, within Psyr_2937 at 3525.083 kb on + strand, within Psyr_2937 at 3525.084 kb on - strand, within Psyr_2937 at 3525.084 kb on - strand, within Psyr_2937 at 3525.084 kb on - strand, within Psyr_2937 at 3525.084 kb on - strand, within Psyr_2937 at 3525.084 kb on - strand, within Psyr_2937 at 3525.084 kb on - strand, within Psyr_2937 at 3525.084 kb on - strand, within Psyr_2937 at 3525.207 kb on + strand, within Psyr_2937 at 3525.210 kb on + strand, within Psyr_2937 at 3525.210 kb on + strand, within Psyr_2937 at 3525.211 kb on - strand, within Psyr_2937 at 3525.211 kb on - strand, within Psyr_2937 at 3525.211 kb on - strand, within Psyr_2937 at 3525.211 kb on - strand, within Psyr_2937 at 3525.432 kb on + strand, within Psyr_2937 at 3525.432 kb on + strand, within Psyr_2937 at 3525.433 kb on - strand, within Psyr_2937 at 3525.433 kb on - strand, within Psyr_2937 at 3525.433 kb on - strand, within Psyr_2937 at 3525.484 kb on - strand, within Psyr_2937 at 3525.484 kb on - strand, within Psyr_2937 at 3525.487 kb on - strand, within Psyr_2937 at 3525.731 kb on + strand at 3525.769 kb on + strand at 3525.770 kb on - strand at 3525.770 kb on - strand at 3525.779 kb on - strand at 3525.779 kb on - strand at 3525.779 kb on - strand at 3525.779 kb on - strand at 3526.201 kb on + strand, within Psyr_2938 at 3526.471 kb on - strand, within Psyr_2938 at 3526.516 kb on + strand, within Psyr_2938 at 3526.516 kb on + strand, within Psyr_2938 at 3526.517 kb on - strand, within Psyr_2938 at 3526.517 kb on - strand, within Psyr_2938 at 3526.517 kb on - strand, within Psyr_2938 at 3526.517 kb on - strand, within Psyr_2938 at 3526.582 kb on + strand at 3526.583 kb on - strand at 3526.691 kb on + strand at 3526.803 kb on + strand at 3527.316 kb on + strand, within Psyr_2939 at 3527.627 kb on + strand at 3527.627 kb on + strand at 3527.628 kb on - strand at 3527.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 3,524,823 + Psyr_2937 0.27 +0.1 3,524,823 + Psyr_2937 0.27 +2.1 3,524,823 + Psyr_2937 0.27 +0.7 3,524,823 + Psyr_2937 0.27 -0.7 3,524,823 + Psyr_2937 0.27 -0.6 3,524,824 - Psyr_2937 0.27 -1.9 3,524,824 - Psyr_2937 0.27 +0.9 3,524,824 - Psyr_2937 0.27 +0.5 3,525,083 + -0.4 3,525,083 + Psyr_2937 0.51 -0.4 3,525,083 + Psyr_2937 0.51 -0.1 3,525,083 + Psyr_2937 0.51 +0.3 3,525,083 + Psyr_2937 0.51 -1.2 3,525,083 + Psyr_2937 0.51 +0.2 3,525,084 - Psyr_2937 0.51 -0.2 3,525,084 - Psyr_2937 0.51 +0.6 3,525,084 - Psyr_2937 0.51 +2.2 3,525,084 - Psyr_2937 0.51 +2.4 3,525,084 - Psyr_2937 0.51 +0.7 3,525,084 - Psyr_2937 0.51 +0.5 3,525,084 - Psyr_2937 0.51 -1.4 3,525,207 + Psyr_2937 0.62 -1.0 3,525,210 + Psyr_2937 0.62 +0.1 3,525,210 + Psyr_2937 0.62 +0.2 3,525,211 - Psyr_2937 0.62 -1.2 3,525,211 - Psyr_2937 0.62 +0.4 3,525,211 - Psyr_2937 0.62 +2.0 3,525,211 - Psyr_2937 0.62 +0.2 3,525,432 + Psyr_2937 0.83 +0.3 3,525,432 + Psyr_2937 0.83 -0.5 3,525,433 - Psyr_2937 0.83 +0.3 3,525,433 - Psyr_2937 0.83 +0.0 3,525,433 - Psyr_2937 0.83 -0.0 3,525,484 - Psyr_2937 0.87 -0.1 3,525,484 - Psyr_2937 0.87 -0.1 3,525,487 - Psyr_2937 0.88 -1.0 3,525,731 + -0.8 3,525,769 + +0.1 3,525,770 - -0.6 3,525,770 - -0.3 3,525,779 - +0.7 3,525,779 - +0.6 3,525,779 - -0.6 3,525,779 - -0.8 3,526,201 + Psyr_2938 0.50 +0.7 3,526,471 - Psyr_2938 0.80 -0.5 3,526,516 + Psyr_2938 0.85 +0.9 3,526,516 + Psyr_2938 0.85 +0.4 3,526,517 - Psyr_2938 0.85 +0.6 3,526,517 - Psyr_2938 0.85 +0.6 3,526,517 - Psyr_2938 0.85 +1.9 3,526,517 - Psyr_2938 0.85 +0.7 3,526,582 + -0.2 3,526,583 - -0.3 3,526,691 + +0.2 3,526,803 + +0.5 3,527,316 + Psyr_2939 0.63 +0.2 3,527,627 + -1.1 3,527,627 + +2.8 3,527,628 - -1.1 3,527,628 - -0.2
Or see this region's nucleotide sequence