Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1939

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1937 and Psyr_1938 are separated by 0 nucleotidesPsyr_1938 and Psyr_1939 overlap by 4 nucleotidesPsyr_1939 and Psyr_1940 overlap by 4 nucleotidesPsyr_1940 and Psyr_1941 overlap by 4 nucleotides Psyr_1937: Psyr_1937 - UspA, at 2,210,190 to 2,210,621 _1937 Psyr_1938: Psyr_1938 - Response regulator receiver, at 2,210,622 to 2,211,086 _1938 Psyr_1939: Psyr_1939 - PAS, at 2,211,083 to 2,213,422 _1939 Psyr_1940: Psyr_1940 - regulatory protein, LuxR:Response regulator receiver, at 2,213,419 to 2,214,087 _1940 Psyr_1941: Psyr_1941 - ATP-binding region, ATPase-like:Histidine kinase, at 2,214,084 to 2,215,268 _1941 Position (kb) 2211 2212 2213 2214Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2210.247 kb on + strand, within Psyr_1937at 2210.248 kb on - strand, within Psyr_1937at 2210.248 kb on - strand, within Psyr_1937at 2210.248 kb on - strand, within Psyr_1937at 2210.326 kb on - strand, within Psyr_1937at 2210.619 kb on + strandat 2210.620 kb on - strandat 2210.696 kb on + strand, within Psyr_1938at 2210.697 kb on - strand, within Psyr_1938at 2210.697 kb on - strand, within Psyr_1938at 2210.697 kb on - strand, within Psyr_1938at 2210.698 kb on + strand, within Psyr_1938at 2210.698 kb on + strand, within Psyr_1938at 2210.699 kb on - strand, within Psyr_1938at 2210.699 kb on - strand, within Psyr_1938at 2210.699 kb on - strand, within Psyr_1938at 2210.699 kb on - strand, within Psyr_1938at 2210.848 kb on + strand, within Psyr_1938at 2210.848 kb on + strand, within Psyr_1938at 2210.849 kb on - strand, within Psyr_1938at 2210.863 kb on - strand, within Psyr_1938at 2211.603 kb on - strand, within Psyr_1939at 2211.755 kb on + strand, within Psyr_1939at 2211.755 kb on + strand, within Psyr_1939at 2211.800 kb on + strand, within Psyr_1939at 2211.822 kb on + strand, within Psyr_1939at 2211.822 kb on + strand, within Psyr_1939at 2211.823 kb on - strand, within Psyr_1939at 2212.090 kb on + strand, within Psyr_1939at 2212.091 kb on - strand, within Psyr_1939at 2212.091 kb on - strand, within Psyr_1939at 2212.401 kb on + strand, within Psyr_1939at 2212.401 kb on + strand, within Psyr_1939at 2212.467 kb on + strand, within Psyr_1939at 2212.467 kb on + strand, within Psyr_1939at 2212.468 kb on - strand, within Psyr_1939at 2212.520 kb on - strand, within Psyr_1939at 2212.520 kb on - strand, within Psyr_1939at 2212.520 kb on - strand, within Psyr_1939at 2212.520 kb on - strand, within Psyr_1939at 2212.582 kb on - strand, within Psyr_1939at 2212.962 kb on - strand, within Psyr_1939at 2212.962 kb on - strand, within Psyr_1939at 2212.965 kb on + strand, within Psyr_1939at 2212.965 kb on + strand, within Psyr_1939at 2212.965 kb on + strand, within Psyr_1939at 2212.966 kb on - strand, within Psyr_1939at 2212.966 kb on - strand, within Psyr_1939at 2212.966 kb on - strand, within Psyr_1939at 2212.966 kb on - strand, within Psyr_1939at 2212.966 kb on - strand, within Psyr_1939at 2212.966 kb on - strand, within Psyr_1939at 2212.966 kb on - strand, within Psyr_1939at 2212.966 kb on - strand, within Psyr_1939at 2213.273 kb on + strandat 2213.311 kb on + strandat 2213.313 kb on + strandat 2213.313 kb on + strandat 2213.313 kb on + strandat 2213.313 kb on + strandat 2213.314 kb on - strandat 2213.314 kb on - strandat 2214.318 kb on + strand, within Psyr_1941

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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2,210,247 + Psyr_1937 0.13 -2.7
2,210,248 - Psyr_1937 0.13 -0.1
2,210,248 - Psyr_1937 0.13 +2.2
2,210,248 - Psyr_1937 0.13 +0.4
2,210,326 - Psyr_1937 0.31 +0.2
2,210,619 + -0.1
2,210,620 - -1.1
2,210,696 + Psyr_1938 0.16 +0.6
2,210,697 - Psyr_1938 0.16 -0.1
2,210,697 - Psyr_1938 0.16 -0.1
2,210,697 - Psyr_1938 0.16 +0.2
2,210,698 + Psyr_1938 0.16 +0.9
2,210,698 + Psyr_1938 0.16 -1.6
2,210,699 - Psyr_1938 0.17 -0.1
2,210,699 - Psyr_1938 0.17 -0.5
2,210,699 - Psyr_1938 0.17 -0.7
2,210,699 - Psyr_1938 0.17 +1.2
2,210,848 + Psyr_1938 0.49 -0.1
2,210,848 + Psyr_1938 0.49 +0.0
2,210,849 - Psyr_1938 0.49 -0.7
2,210,863 - Psyr_1938 0.52 +0.8
2,211,603 - Psyr_1939 0.22 +0.9
2,211,755 + Psyr_1939 0.29 -0.2
2,211,755 + Psyr_1939 0.29 +1.6
2,211,800 + Psyr_1939 0.31 +3.0
2,211,822 + Psyr_1939 0.32 +0.9
2,211,822 + Psyr_1939 0.32 +1.3
2,211,823 - Psyr_1939 0.32 -0.1
2,212,090 + Psyr_1939 0.43 +0.5
2,212,091 - Psyr_1939 0.43 +1.3
2,212,091 - Psyr_1939 0.43 +0.0
2,212,401 + Psyr_1939 0.56 +2.5
2,212,401 + Psyr_1939 0.56 +0.4
2,212,467 + Psyr_1939 0.59 -0.4
2,212,467 + Psyr_1939 0.59 +0.6
2,212,468 - Psyr_1939 0.59 +2.0
2,212,520 - Psyr_1939 0.61 +0.9
2,212,520 - Psyr_1939 0.61 -0.3
2,212,520 - Psyr_1939 0.61 -0.3
2,212,520 - Psyr_1939 0.61 -1.8
2,212,582 - Psyr_1939 0.64 +0.0
2,212,962 - Psyr_1939 0.80 -0.5
2,212,962 - Psyr_1939 0.80 -1.1
2,212,965 + Psyr_1939 0.80 +0.6
2,212,965 + Psyr_1939 0.80 +0.6
2,212,965 + Psyr_1939 0.80 +0.7
2,212,966 - Psyr_1939 0.80 +0.2
2,212,966 - Psyr_1939 0.80 -0.3
2,212,966 - Psyr_1939 0.80 -0.5
2,212,966 - Psyr_1939 0.80 +0.6
2,212,966 - Psyr_1939 0.80 +1.4
2,212,966 - Psyr_1939 0.80 +0.4
2,212,966 - Psyr_1939 0.80 -0.4
2,212,966 - Psyr_1939 0.80 +0.0
2,213,273 + -0.0
2,213,311 + +1.2
2,213,313 + -0.6
2,213,313 + +1.2
2,213,313 + -0.0
2,213,313 + +0.1
2,213,314 - +1.1
2,213,314 - +0.4
2,214,318 + Psyr_1941 0.20 +0.9

Or see this region's nucleotide sequence