Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1737

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1736 and Psyr_1737 are separated by 299 nucleotidesPsyr_1737 and Psyr_1738 overlap by 1 nucleotides Psyr_1736: Psyr_1736 - Helix-turn-helix, Fis-type, at 1,971,971 to 1,973,824 _1736 Psyr_1737: Psyr_1737 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 1,974,124 to 1,975,218 _1737 Psyr_1738: Psyr_1738 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 1,975,218 to 1,976,333 _1738 Position (kb) 1974 1975 1976Strain fitness (log2 ratio) -2 -1 0 1 2at 1973.847 kb on + strandat 1973.847 kb on + strandat 1973.847 kb on + strandat 1973.848 kb on - strandat 1973.848 kb on - strandat 1973.862 kb on + strandat 1973.971 kb on + strandat 1974.617 kb on - strand, within Psyr_1737at 1974.673 kb on - strand, within Psyr_1737at 1974.682 kb on - strand, within Psyr_1737at 1974.682 kb on - strand, within Psyr_1737at 1974.682 kb on - strand, within Psyr_1737at 1974.685 kb on + strand, within Psyr_1737at 1974.686 kb on - strand, within Psyr_1737at 1974.784 kb on + strand, within Psyr_1737at 1974.857 kb on + strand, within Psyr_1737at 1974.857 kb on + strand, within Psyr_1737at 1974.857 kb on + strand, within Psyr_1737at 1974.857 kb on + strand, within Psyr_1737at 1974.858 kb on - strand, within Psyr_1737at 1974.858 kb on - strand, within Psyr_1737at 1974.858 kb on - strand, within Psyr_1737at 1974.858 kb on - strand, within Psyr_1737at 1974.858 kb on - strand, within Psyr_1737at 1974.937 kb on + strand, within Psyr_1737at 1974.938 kb on - strand, within Psyr_1737at 1975.105 kb on + strand, within Psyr_1737at 1975.105 kb on + strand, within Psyr_1737at 1975.105 kb on + strand, within Psyr_1737at 1975.106 kb on - strand, within Psyr_1737at 1975.106 kb on - strand, within Psyr_1737at 1975.106 kb on - strand, within Psyr_1737at 1975.132 kb on + strandat 1975.133 kb on - strandat 1975.133 kb on - strandat 1975.133 kb on - strandat 1975.157 kb on + strandat 1975.201 kb on - strandat 1975.254 kb on + strandat 1975.254 kb on + strandat 1975.254 kb on + strandat 1975.255 kb on - strandat 1975.255 kb on - strandat 1975.259 kb on + strandat 1975.282 kb on - strandat 1975.282 kb on - strandat 1975.282 kb on - strandat 1975.326 kb on + strandat 1975.327 kb on - strandat 1975.327 kb on - strandat 1975.491 kb on + strand, within Psyr_1738at 1975.491 kb on + strand, within Psyr_1738at 1975.492 kb on - strand, within Psyr_1738at 1975.492 kb on - strand, within Psyr_1738at 1975.492 kb on - strand, within Psyr_1738at 1975.800 kb on + strand, within Psyr_1738at 1975.800 kb on + strand, within Psyr_1738at 1975.857 kb on + strand, within Psyr_1738at 1975.857 kb on + strand, within Psyr_1738at 1975.858 kb on - strandat 1975.858 kb on - strand, within Psyr_1738at 1975.858 kb on - strand, within Psyr_1738at 1975.858 kb on - strand, within Psyr_1738at 1976.045 kb on + strand, within Psyr_1738at 1976.045 kb on + strand, within Psyr_1738at 1976.109 kb on + strand, within Psyr_1738at 1976.139 kb on + strand, within Psyr_1738at 1976.139 kb on + strand, within Psyr_1738at 1976.139 kb on + strand, within Psyr_1738at 1976.139 kb on + strand, within Psyr_1738at 1976.139 kb on + strand, within Psyr_1738at 1976.139 kb on + strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.161 kb on - strand, within Psyr_1738at 1976.161 kb on - strand, within Psyr_1738at 1976.161 kb on - strand, within Psyr_1738at 1976.161 kb on - strand, within Psyr_1738at 1976.161 kb on - strand, within Psyr_1738

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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1,973,847 + -0.1
1,973,847 + +0.2
1,973,847 + +0.8
1,973,848 - -0.9
1,973,848 - +0.3
1,973,862 + -1.0
1,973,971 + -1.6
1,974,617 - Psyr_1737 0.45 +0.3
1,974,673 - Psyr_1737 0.50 +0.6
1,974,682 - Psyr_1737 0.51 +0.9
1,974,682 - Psyr_1737 0.51 +1.2
1,974,682 - Psyr_1737 0.51 +1.4
1,974,685 + Psyr_1737 0.51 -0.3
1,974,686 - Psyr_1737 0.51 -0.0
1,974,784 + Psyr_1737 0.60 -1.4
1,974,857 + Psyr_1737 0.67 +0.9
1,974,857 + Psyr_1737 0.67 +0.9
1,974,857 + Psyr_1737 0.67 +0.7
1,974,857 + Psyr_1737 0.67 +0.2
1,974,858 - Psyr_1737 0.67 +0.2
1,974,858 - Psyr_1737 0.67 -0.3
1,974,858 - Psyr_1737 0.67 +0.2
1,974,858 - Psyr_1737 0.67 +0.2
1,974,858 - Psyr_1737 0.67 -1.4
1,974,937 + Psyr_1737 0.74 +1.2
1,974,938 - Psyr_1737 0.74 -0.7
1,975,105 + Psyr_1737 0.90 +0.2
1,975,105 + Psyr_1737 0.90 -0.0
1,975,105 + Psyr_1737 0.90 -0.4
1,975,106 - Psyr_1737 0.90 +0.6
1,975,106 - Psyr_1737 0.90 +0.8
1,975,106 - Psyr_1737 0.90 +1.2
1,975,132 + -0.7
1,975,133 - -0.9
1,975,133 - -0.6
1,975,133 - -0.3
1,975,157 + -0.3
1,975,201 - -0.3
1,975,254 + +0.9
1,975,254 + -0.4
1,975,254 + +2.5
1,975,255 - +0.1
1,975,255 - -0.0
1,975,259 + +0.4
1,975,282 - +0.0
1,975,282 - -2.0
1,975,282 - +0.2
1,975,326 + -0.7
1,975,327 - -0.1
1,975,327 - -2.1
1,975,491 + Psyr_1738 0.24 -0.2
1,975,491 + Psyr_1738 0.24 +0.2
1,975,492 - Psyr_1738 0.25 -1.5
1,975,492 - Psyr_1738 0.25 -0.4
1,975,492 - Psyr_1738 0.25 -0.4
1,975,800 + Psyr_1738 0.52 -1.1
1,975,800 + Psyr_1738 0.52 +1.0
1,975,857 + Psyr_1738 0.57 +0.4
1,975,857 + Psyr_1738 0.57 +1.2
1,975,858 - +0.6
1,975,858 - Psyr_1738 0.57 +0.9
1,975,858 - Psyr_1738 0.57 -0.2
1,975,858 - Psyr_1738 0.57 -1.6
1,976,045 + Psyr_1738 0.74 -1.5
1,976,045 + Psyr_1738 0.74 -0.6
1,976,109 + Psyr_1738 0.80 -0.8
1,976,139 + Psyr_1738 0.83 -0.5
1,976,139 + Psyr_1738 0.83 -0.1
1,976,139 + Psyr_1738 0.83 +0.4
1,976,139 + Psyr_1738 0.83 -1.4
1,976,139 + Psyr_1738 0.83 -1.1
1,976,139 + Psyr_1738 0.83 +0.6
1,976,140 - Psyr_1738 0.83 -0.1
1,976,140 - Psyr_1738 0.83 -1.0
1,976,140 - Psyr_1738 0.83 -1.4
1,976,140 - Psyr_1738 0.83 -0.8
1,976,140 - Psyr_1738 0.83 +0.4
1,976,140 - Psyr_1738 0.83 -0.3
1,976,140 - Psyr_1738 0.83 -0.2
1,976,140 - Psyr_1738 0.83 +0.4
1,976,161 - Psyr_1738 0.84 +2.2
1,976,161 - Psyr_1738 0.84 -1.5
1,976,161 - Psyr_1738 0.84 +0.2
1,976,161 - Psyr_1738 0.84 +0.5
1,976,161 - Psyr_1738 0.84 -0.4

Or see this region's nucleotide sequence