Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1657

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1656 and Psyr_1657 are separated by 146 nucleotidesPsyr_1657 and Psyr_1658 are separated by 123 nucleotidesPsyr_1658 and Psyr_1659 are separated by 28 nucleotides Psyr_1656: Psyr_1656 - Lysine exporter protein (LYSE/YGGA), at 1,860,127 to 1,860,780 _1656 Psyr_1657: Psyr_1657 - transcriptional regulator, TetR family, at 1,860,927 to 1,861,589 _1657 Psyr_1658: Psyr_1658 - lipoprotein, putative, at 1,861,713 to 1,862,315 _1658 Psyr_1659: Psyr_1659 - Protein of unknown function DUF1285, at 1,862,344 to 1,862,904 _1659 Position (kb) 1860 1861 1862Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1859.943 kb on - strandat 1859.943 kb on - strandat 1859.983 kb on + strandat 1859.983 kb on + strandat 1859.984 kb on - strandat 1859.987 kb on + strandat 1859.987 kb on + strandat 1859.987 kb on + strandat 1859.988 kb on - strandat 1859.988 kb on - strandat 1859.988 kb on - strandat 1859.988 kb on - strandat 1860.050 kb on + strandat 1860.051 kb on - strandat 1860.051 kb on - strandat 1860.051 kb on - strandat 1860.316 kb on + strand, within Psyr_1656at 1860.316 kb on + strand, within Psyr_1656at 1860.316 kb on + strand, within Psyr_1656at 1860.317 kb on - strand, within Psyr_1656at 1860.679 kb on + strand, within Psyr_1656at 1860.679 kb on + strand, within Psyr_1656at 1860.679 kb on + strand, within Psyr_1656at 1860.679 kb on + strand, within Psyr_1656at 1860.679 kb on + strand, within Psyr_1656at 1860.679 kb on + strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.706 kb on + strand, within Psyr_1656at 1860.718 kb on + strandat 1860.718 kb on + strandat 1860.718 kb on + strandat 1860.718 kb on + strandat 1860.718 kb on + strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.778 kb on + strandat 1860.779 kb on - strandat 1860.852 kb on + strandat 1860.852 kb on + strandat 1860.852 kb on + strandat 1860.852 kb on + strandat 1860.853 kb on - strandat 1860.853 kb on - strandat 1860.873 kb on - strandat 1860.888 kb on + strandat 1860.888 kb on + strandat 1860.889 kb on - strandat 1860.889 kb on - strandat 1860.891 kb on + strandat 1860.944 kb on + strandat 1860.944 kb on + strandat 1861.077 kb on + strand, within Psyr_1657at 1861.077 kb on + strand, within Psyr_1657at 1861.077 kb on + strand, within Psyr_1657at 1861.077 kb on + strand, within Psyr_1657at 1861.077 kb on + strand, within Psyr_1657at 1861.078 kb on - strand, within Psyr_1657at 1861.078 kb on - strand, within Psyr_1657at 1861.078 kb on - strand, within Psyr_1657at 1861.078 kb on - strand, within Psyr_1657at 1861.078 kb on - strand, within Psyr_1657at 1861.078 kb on - strand, within Psyr_1657at 1861.107 kb on + strand, within Psyr_1657at 1861.108 kb on - strand, within Psyr_1657at 1861.108 kb on - strand, within Psyr_1657at 1861.108 kb on - strand, within Psyr_1657at 1861.200 kb on + strand, within Psyr_1657at 1861.392 kb on + strand, within Psyr_1657at 1861.392 kb on + strand, within Psyr_1657at 1861.393 kb on - strand, within Psyr_1657at 1861.393 kb on - strand, within Psyr_1657at 1861.395 kb on + strand, within Psyr_1657at 1861.396 kb on - strand, within Psyr_1657at 1861.401 kb on + strand, within Psyr_1657at 1861.423 kb on + strand, within Psyr_1657at 1861.423 kb on + strand, within Psyr_1657at 1861.423 kb on + strand, within Psyr_1657at 1861.423 kb on + strand, within Psyr_1657at 1861.424 kb on - strand, within Psyr_1657at 1861.424 kb on - strand, within Psyr_1657at 1861.443 kb on + strand, within Psyr_1657at 1861.444 kb on - strand, within Psyr_1657at 1861.444 kb on - strand, within Psyr_1657at 1861.444 kb on - strand, within Psyr_1657at 1861.697 kb on + strandat 1861.697 kb on + strandat 1861.711 kb on + strandat 1861.718 kb on + strandat 1861.727 kb on + strandat 1861.842 kb on - strand, within Psyr_1658at 1861.878 kb on + strand, within Psyr_1658at 1861.878 kb on + strand, within Psyr_1658at 1861.879 kb on - strand, within Psyr_1658at 1861.879 kb on - strand, within Psyr_1658at 1861.879 kb on - strandat 1861.879 kb on - strand, within Psyr_1658at 1861.968 kb on + strand, within Psyr_1658at 1861.968 kb on + strand, within Psyr_1658at 1861.968 kb on + strand, within Psyr_1658at 1862.049 kb on + strand, within Psyr_1658at 1862.049 kb on + strand, within Psyr_1658at 1862.050 kb on - strand, within Psyr_1658at 1862.050 kb on - strand, within Psyr_1658at 1862.050 kb on - strand, within Psyr_1658at 1862.050 kb on - strand, within Psyr_1658at 1862.050 kb on - strand, within Psyr_1658at 1862.050 kb on - strand, within Psyr_1658at 1862.050 kb on - strand, within Psyr_1658at 1862.187 kb on + strand, within Psyr_1658at 1862.239 kb on - strand, within Psyr_1658at 1862.291 kb on + strandat 1862.291 kb on + strandat 1862.291 kb on + strandat 1862.292 kb on - strandat 1862.313 kb on + strandat 1862.314 kb on - strandat 1862.320 kb on + strandat 1862.476 kb on + strand, within Psyr_1659at 1862.476 kb on + strand, within Psyr_1659at 1862.479 kb on + strand, within Psyr_1659at 1862.480 kb on - strand, within Psyr_1659at 1862.480 kb on - strand, within Psyr_1659at 1862.554 kb on + strand, within Psyr_1659at 1862.554 kb on + strand, within Psyr_1659at 1862.554 kb on + strand, within Psyr_1659at 1862.555 kb on - strand, within Psyr_1659at 1862.555 kb on - strand, within Psyr_1659at 1862.555 kb on - strand, within Psyr_1659

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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1,859,943 - -0.2
1,859,943 - -0.8
1,859,983 + +0.6
1,859,983 + +0.5
1,859,984 - +1.1
1,859,987 + +0.4
1,859,987 + -0.2
1,859,987 + -0.4
1,859,988 - +0.5
1,859,988 - +1.3
1,859,988 - -1.3
1,859,988 - +1.2
1,860,050 + +0.1
1,860,051 - +1.0
1,860,051 - -1.2
1,860,051 - +0.0
1,860,316 + Psyr_1656 0.29 -0.0
1,860,316 + Psyr_1656 0.29 +0.9
1,860,316 + Psyr_1656 0.29 +0.6
1,860,317 - Psyr_1656 0.29 -1.4
1,860,679 + Psyr_1656 0.84 +0.5
1,860,679 + Psyr_1656 0.84 -0.8
1,860,679 + Psyr_1656 0.84 -0.5
1,860,679 + Psyr_1656 0.84 -0.7
1,860,679 + Psyr_1656 0.84 -0.2
1,860,679 + Psyr_1656 0.84 +0.6
1,860,680 - Psyr_1656 0.85 +0.2
1,860,680 - Psyr_1656 0.85 +0.6
1,860,680 - Psyr_1656 0.85 +0.0
1,860,680 - Psyr_1656 0.85 -0.1
1,860,680 - Psyr_1656 0.85 +1.4
1,860,680 - Psyr_1656 0.85 -0.5
1,860,680 - Psyr_1656 0.85 -0.4
1,860,680 - Psyr_1656 0.85 -0.4
1,860,680 - Psyr_1656 0.85 +0.6
1,860,706 + Psyr_1656 0.89 +0.8
1,860,718 + -0.4
1,860,718 + -0.1
1,860,718 + -0.6
1,860,718 + +0.5
1,860,718 + -0.6
1,860,719 - +1.1
1,860,719 - +1.8
1,860,719 - -0.6
1,860,719 - -0.0
1,860,719 - -2.5
1,860,719 - +0.5
1,860,719 - +0.2
1,860,719 - -1.7
1,860,719 - -0.8
1,860,719 - -1.8
1,860,719 - +0.1
1,860,719 - -1.5
1,860,719 - -2.4
1,860,719 - +0.1
1,860,719 - +0.9
1,860,719 - +0.1
1,860,778 + +0.5
1,860,779 - -0.6
1,860,852 + -1.3
1,860,852 + -0.5
1,860,852 + +0.1
1,860,852 + +0.3
1,860,853 - -0.7
1,860,853 - +0.0
1,860,873 - -0.2
1,860,888 + -1.9
1,860,888 + +0.8
1,860,889 - -1.5
1,860,889 - -0.1
1,860,891 + -0.2
1,860,944 + -0.7
1,860,944 + -0.7
1,861,077 + Psyr_1657 0.23 -0.6
1,861,077 + Psyr_1657 0.23 -0.9
1,861,077 + Psyr_1657 0.23 -0.7
1,861,077 + Psyr_1657 0.23 -2.6
1,861,077 + Psyr_1657 0.23 -1.0
1,861,078 - Psyr_1657 0.23 -1.0
1,861,078 - Psyr_1657 0.23 +0.2
1,861,078 - Psyr_1657 0.23 -1.4
1,861,078 - Psyr_1657 0.23 +0.1
1,861,078 - Psyr_1657 0.23 -0.1
1,861,078 - Psyr_1657 0.23 -0.2
1,861,107 + Psyr_1657 0.27 -0.3
1,861,108 - Psyr_1657 0.27 +0.4
1,861,108 - Psyr_1657 0.27 -0.9
1,861,108 - Psyr_1657 0.27 -0.4
1,861,200 + Psyr_1657 0.41 +2.2
1,861,392 + Psyr_1657 0.70 +0.1
1,861,392 + Psyr_1657 0.70 -0.2
1,861,393 - Psyr_1657 0.70 -0.5
1,861,393 - Psyr_1657 0.70 -1.0
1,861,395 + Psyr_1657 0.71 +0.7
1,861,396 - Psyr_1657 0.71 -2.0
1,861,401 + Psyr_1657 0.71 -1.4
1,861,423 + Psyr_1657 0.75 +1.1
1,861,423 + Psyr_1657 0.75 -2.9
1,861,423 + Psyr_1657 0.75 -0.0
1,861,423 + Psyr_1657 0.75 +0.2
1,861,424 - Psyr_1657 0.75 -1.4
1,861,424 - Psyr_1657 0.75 +0.2
1,861,443 + Psyr_1657 0.78 +0.7
1,861,444 - Psyr_1657 0.78 -0.4
1,861,444 - Psyr_1657 0.78 +0.2
1,861,444 - Psyr_1657 0.78 -1.3
1,861,697 + +0.2
1,861,697 + -0.3
1,861,711 + +1.4
1,861,718 + +1.9
1,861,727 + -1.1
1,861,842 - Psyr_1658 0.21 -0.6
1,861,878 + Psyr_1658 0.27 +1.2
1,861,878 + Psyr_1658 0.27 -0.6
1,861,879 - Psyr_1658 0.28 +1.8
1,861,879 - Psyr_1658 0.28 -0.6
1,861,879 - +0.2
1,861,879 - Psyr_1658 0.28 -0.0
1,861,968 + Psyr_1658 0.42 -0.4
1,861,968 + Psyr_1658 0.42 -0.7
1,861,968 + Psyr_1658 0.42 -0.0
1,862,049 + Psyr_1658 0.56 +0.8
1,862,049 + Psyr_1658 0.56 -1.3
1,862,050 - Psyr_1658 0.56 -0.8
1,862,050 - Psyr_1658 0.56 -0.7
1,862,050 - Psyr_1658 0.56 +0.1
1,862,050 - Psyr_1658 0.56 -0.4
1,862,050 - Psyr_1658 0.56 +0.6
1,862,050 - Psyr_1658 0.56 +1.2
1,862,050 - Psyr_1658 0.56 +0.7
1,862,187 + Psyr_1658 0.79 +0.2
1,862,239 - Psyr_1658 0.87 +0.7
1,862,291 + +0.0
1,862,291 + -0.0
1,862,291 + -1.5
1,862,292 - +1.2
1,862,313 + +1.2
1,862,314 - +1.6
1,862,320 + -1.9
1,862,476 + Psyr_1659 0.24 -0.2
1,862,476 + Psyr_1659 0.24 +0.1
1,862,479 + Psyr_1659 0.24 -0.1
1,862,480 - Psyr_1659 0.24 +4.4
1,862,480 - Psyr_1659 0.24 -0.6
1,862,554 + Psyr_1659 0.37 +0.0
1,862,554 + Psyr_1659 0.37 -0.1
1,862,554 + Psyr_1659 0.37 +0.5
1,862,555 - Psyr_1659 0.38 +0.2
1,862,555 - Psyr_1659 0.38 -0.5
1,862,555 - Psyr_1659 0.38 +0.2

Or see this region's nucleotide sequence