Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1641

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1639 and Psyr_1640 overlap by 11 nucleotidesPsyr_1640 and Psyr_1641 are separated by 24 nucleotidesPsyr_1641 and Psyr_1642 are separated by 55 nucleotidesPsyr_1642 and Psyr_1643 are separated by 31 nucleotides Psyr_1639: Psyr_1639 - ribosomal large subunit pseudouridine synthase C, at 1,846,318 to 1,847,274 _1639 Psyr_1640: Psyr_1640 - HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 1,847,264 to 1,847,926 _1640 Psyr_1641: Psyr_1641 - Peptidase S49, SppA, at 1,847,951 to 1,848,949 _1641 Psyr_1642: Psyr_1642 - Maf-like protein, at 1,849,005 to 1,849,658 _1642 Psyr_1643: Psyr_1643 - Protein of unknown function DUF177, at 1,849,690 to 1,850,217 _1643 Position (kb) 1847 1848 1849Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1847.090 kb on + strand, within Psyr_1639at 1847.107 kb on + strand, within Psyr_1639at 1847.107 kb on + strand, within Psyr_1639at 1847.108 kb on - strand, within Psyr_1639at 1847.108 kb on - strand, within Psyr_1639at 1847.108 kb on - strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.211 kb on + strandat 1847.212 kb on - strandat 1847.212 kb on - strandat 1847.277 kb on - strandat 1847.486 kb on + strand, within Psyr_1640at 1847.487 kb on - strand, within Psyr_1640at 1847.487 kb on - strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.651 kb on + strand, within Psyr_1640at 1847.651 kb on + strand, within Psyr_1640at 1847.652 kb on - strand, within Psyr_1640at 1847.652 kb on - strand, within Psyr_1640at 1847.652 kb on - strandat 1848.019 kb on + strandat 1848.019 kb on + strandat 1848.020 kb on - strandat 1848.020 kb on - strandat 1848.345 kb on - strand, within Psyr_1641at 1848.350 kb on + strand, within Psyr_1641at 1848.351 kb on - strand, within Psyr_1641at 1848.398 kb on + strand, within Psyr_1641at 1848.398 kb on + strand, within Psyr_1641at 1848.399 kb on - strand, within Psyr_1641at 1848.399 kb on - strand, within Psyr_1641at 1848.434 kb on + strand, within Psyr_1641at 1848.434 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.464 kb on + strand, within Psyr_1641at 1848.464 kb on + strand, within Psyr_1641at 1848.464 kb on + strand, within Psyr_1641at 1848.465 kb on - strand, within Psyr_1641at 1848.465 kb on - strand, within Psyr_1641at 1848.559 kb on + strand, within Psyr_1641at 1848.559 kb on + strand, within Psyr_1641at 1848.560 kb on - strand, within Psyr_1641at 1848.560 kb on - strand, within Psyr_1641at 1848.560 kb on - strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.565 kb on + strand, within Psyr_1641at 1848.565 kb on + strand, within Psyr_1641at 1848.565 kb on + strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.842 kb on + strand, within Psyr_1641at 1848.842 kb on + strand, within Psyr_1641at 1848.964 kb on + strandat 1848.964 kb on + strandat 1848.964 kb on + strandat 1848.964 kb on + strandat 1848.965 kb on - strandat 1848.966 kb on + strandat 1848.966 kb on + strandat 1848.966 kb on + strandat 1848.967 kb on - strandat 1848.967 kb on - strandat 1848.967 kb on - strandat 1848.967 kb on - strandat 1848.967 kb on - strandat 1848.967 kb on - strandat 1848.967 kb on - strandat 1849.029 kb on + strandat 1849.029 kb on + strandat 1849.032 kb on + strandat 1849.032 kb on + strandat 1849.032 kb on + strandat 1849.032 kb on + strandat 1849.033 kb on - strandat 1849.033 kb on - strandat 1849.033 kb on - strandat 1849.050 kb on + strandat 1849.051 kb on - strandat 1849.051 kb on - strandat 1849.150 kb on + strand, within Psyr_1642at 1849.214 kb on + strand, within Psyr_1642at 1849.214 kb on + strand, within Psyr_1642at 1849.215 kb on - strand, within Psyr_1642at 1849.215 kb on - strand, within Psyr_1642at 1849.449 kb on + strand, within Psyr_1642at 1849.450 kb on - strand, within Psyr_1642at 1849.614 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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1,847,090 + Psyr_1639 0.81 +0.2
1,847,107 + Psyr_1639 0.82 +1.0
1,847,107 + Psyr_1639 0.82 -0.0
1,847,108 - Psyr_1639 0.83 -0.2
1,847,108 - Psyr_1639 0.83 +0.2
1,847,108 - Psyr_1639 0.83 -0.5
1,847,173 + Psyr_1639 0.89 +1.5
1,847,173 + Psyr_1639 0.89 +0.1
1,847,173 + Psyr_1639 0.89 -0.1
1,847,173 + Psyr_1639 0.89 +1.0
1,847,173 + Psyr_1639 0.89 -0.8
1,847,174 - Psyr_1639 0.89 -1.4
1,847,174 - Psyr_1639 0.89 -0.3
1,847,174 - Psyr_1639 0.89 -1.0
1,847,174 - Psyr_1639 0.89 -0.1
1,847,174 - Psyr_1639 0.89 -0.5
1,847,174 - Psyr_1639 0.89 +1.2
1,847,174 - Psyr_1639 0.89 -2.2
1,847,174 - Psyr_1639 0.89 -0.9
1,847,174 - Psyr_1639 0.89 -0.2
1,847,174 - Psyr_1639 0.89 -0.2
1,847,174 - Psyr_1639 0.89 -0.7
1,847,174 - Psyr_1639 0.89 +0.8
1,847,174 - Psyr_1639 0.89 +0.7
1,847,174 - Psyr_1639 0.89 +0.8
1,847,174 - Psyr_1639 0.89 -0.6
1,847,174 - Psyr_1639 0.89 -1.6
1,847,211 + -1.4
1,847,212 - -1.3
1,847,212 - +0.2
1,847,277 - +4.0
1,847,486 + Psyr_1640 0.33 +1.9
1,847,487 - Psyr_1640 0.34 -1.0
1,847,487 - Psyr_1640 0.34 -0.5
1,847,498 + Psyr_1640 0.35 -0.8
1,847,498 + Psyr_1640 0.35 +0.2
1,847,498 + Psyr_1640 0.35 +1.7
1,847,498 + Psyr_1640 0.35 +0.1
1,847,498 + Psyr_1640 0.35 +2.0
1,847,498 + Psyr_1640 0.35 +2.2
1,847,498 + Psyr_1640 0.35 -0.1
1,847,498 + Psyr_1640 0.35 +1.2
1,847,498 + Psyr_1640 0.35 -1.4
1,847,498 + Psyr_1640 0.35 +1.9
1,847,498 + Psyr_1640 0.35 -1.4
1,847,498 + Psyr_1640 0.35 -1.0
1,847,498 + Psyr_1640 0.35 -0.2
1,847,498 + Psyr_1640 0.35 +0.5
1,847,498 + Psyr_1640 0.35 +0.6
1,847,499 - Psyr_1640 0.35 +0.6
1,847,499 - Psyr_1640 0.35 -0.8
1,847,499 - Psyr_1640 0.35 -2.1
1,847,499 - Psyr_1640 0.35 -0.5
1,847,499 - Psyr_1640 0.35 -1.0
1,847,499 - Psyr_1640 0.35 -0.4
1,847,651 + Psyr_1640 0.58 -0.6
1,847,651 + Psyr_1640 0.58 +1.2
1,847,652 - Psyr_1640 0.59 +0.4
1,847,652 - Psyr_1640 0.59 -1.6
1,847,652 - +0.5
1,848,019 + +0.6
1,848,019 + +0.5
1,848,020 - -0.1
1,848,020 - -0.5
1,848,345 - Psyr_1641 0.39 -1.0
1,848,350 + Psyr_1641 0.40 +0.4
1,848,351 - Psyr_1641 0.40 +1.2
1,848,398 + Psyr_1641 0.45 +0.6
1,848,398 + Psyr_1641 0.45 +0.3
1,848,399 - Psyr_1641 0.45 +1.8
1,848,399 - Psyr_1641 0.45 -0.6
1,848,434 + Psyr_1641 0.48 +1.2
1,848,434 + Psyr_1641 0.48 +0.0
1,848,437 + Psyr_1641 0.49 +0.5
1,848,437 + Psyr_1641 0.49 -1.5
1,848,437 + Psyr_1641 0.49 +1.2
1,848,437 + Psyr_1641 0.49 +0.1
1,848,437 + Psyr_1641 0.49 -0.7
1,848,437 + Psyr_1641 0.49 -1.1
1,848,437 + Psyr_1641 0.49 -1.8
1,848,437 + Psyr_1641 0.49 +0.0
1,848,437 + Psyr_1641 0.49 -2.5
1,848,437 + Psyr_1641 0.49 -0.3
1,848,437 + Psyr_1641 0.49 -0.8
1,848,438 - Psyr_1641 0.49 -1.9
1,848,438 - Psyr_1641 0.49 -2.4
1,848,438 - Psyr_1641 0.49 -2.9
1,848,438 - Psyr_1641 0.49 -2.1
1,848,438 - Psyr_1641 0.49 +0.0
1,848,438 - Psyr_1641 0.49 +0.9
1,848,464 + Psyr_1641 0.51 -1.0
1,848,464 + Psyr_1641 0.51 +0.2
1,848,464 + Psyr_1641 0.51 -0.6
1,848,465 - Psyr_1641 0.51 +1.2
1,848,465 - Psyr_1641 0.51 +0.2
1,848,559 + Psyr_1641 0.61 -0.4
1,848,559 + Psyr_1641 0.61 -1.1
1,848,560 - Psyr_1641 0.61 -1.8
1,848,560 - Psyr_1641 0.61 +0.2
1,848,560 - Psyr_1641 0.61 -1.1
1,848,563 + Psyr_1641 0.61 -0.8
1,848,563 + Psyr_1641 0.61 -1.3
1,848,563 + Psyr_1641 0.61 +0.8
1,848,563 + Psyr_1641 0.61 -1.4
1,848,563 + Psyr_1641 0.61 -0.4
1,848,563 + Psyr_1641 0.61 +0.5
1,848,563 + Psyr_1641 0.61 -1.6
1,848,563 + Psyr_1641 0.61 +0.4
1,848,563 + Psyr_1641 0.61 +0.3
1,848,564 - Psyr_1641 0.61 -0.4
1,848,564 - Psyr_1641 0.61 -0.4
1,848,564 - Psyr_1641 0.61 -2.1
1,848,564 - Psyr_1641 0.61 -0.4
1,848,564 - Psyr_1641 0.61 -0.8
1,848,564 - Psyr_1641 0.61 -0.2
1,848,565 + Psyr_1641 0.61 -0.0
1,848,565 + Psyr_1641 0.61 +0.8
1,848,565 + Psyr_1641 0.61 +0.2
1,848,801 - Psyr_1641 0.85 -0.8
1,848,801 - Psyr_1641 0.85 -1.0
1,848,801 - Psyr_1641 0.85 +0.1
1,848,801 - Psyr_1641 0.85 -0.1
1,848,801 - Psyr_1641 0.85 -1.7
1,848,801 - Psyr_1641 0.85 -2.5
1,848,801 - Psyr_1641 0.85 -0.6
1,848,842 + Psyr_1641 0.89 -1.1
1,848,842 + Psyr_1641 0.89 -1.2
1,848,964 + -0.5
1,848,964 + +1.2
1,848,964 + +1.1
1,848,964 + -0.7
1,848,965 - -0.3
1,848,966 + +0.4
1,848,966 + +0.2
1,848,966 + -0.2
1,848,967 - +0.2
1,848,967 - -1.8
1,848,967 - +0.1
1,848,967 - -0.8
1,848,967 - -0.6
1,848,967 - -0.0
1,848,967 - +0.6
1,849,029 + -0.4
1,849,029 + +0.3
1,849,032 + -0.5
1,849,032 + -0.5
1,849,032 + -0.7
1,849,032 + +0.1
1,849,033 - -0.3
1,849,033 - -0.7
1,849,033 - -0.6
1,849,050 + -2.5
1,849,051 - +0.1
1,849,051 - -0.1
1,849,150 + Psyr_1642 0.22 +0.7
1,849,214 + Psyr_1642 0.32 -0.2
1,849,214 + Psyr_1642 0.32 +0.4
1,849,215 - Psyr_1642 0.32 +0.8
1,849,215 - Psyr_1642 0.32 -1.0
1,849,449 + Psyr_1642 0.68 +1.9
1,849,450 - Psyr_1642 0.68 -1.0
1,849,614 - +0.2

Or see this region's nucleotide sequence