Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0872 and Psyr_0873 overlap by 4 nucleotides Psyr_0873 and Psyr_0874 are separated by 201 nucleotides Psyr_0874 and Psyr_0875 are separated by 2 nucleotides
Psyr_0872: Psyr_0872 - Alkaline phosphatase, at 994,272 to 995,843
_0872
Psyr_0873: Psyr_0873 - GCN5-related N-acetyltransferase, at 995,840 to 996,403
_0873
Psyr_0874: Psyr_0874 - outer membrane transport energization protein ExbD, at 996,605 to 997,012
_0874
Psyr_0875: Psyr_0875 - outer membrane transport energization protein TonB, at 997,015 to 997,779
_0875
Position (kb) 995
996
997 Strain fitness (log2 ratio) -2
-1
0
1
2 at 994.975 kb on + strand, within Psyr_0872 at 994.975 kb on + strand, within Psyr_0872 at 994.976 kb on - strand, within Psyr_0872 at 994.979 kb on + strand, within Psyr_0872 at 994.979 kb on + strand, within Psyr_0872 at 994.980 kb on - strand, within Psyr_0872 at 995.033 kb on - strand, within Psyr_0872 at 995.033 kb on - strand at 995.033 kb on - strand, within Psyr_0872 at 995.113 kb on + strand, within Psyr_0872 at 995.114 kb on - strand, within Psyr_0872 at 995.198 kb on - strand, within Psyr_0872 at 995.198 kb on - strand, within Psyr_0872 at 995.198 kb on - strand, within Psyr_0872 at 995.283 kb on + strand, within Psyr_0872 at 995.284 kb on - strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.302 kb on + strand, within Psyr_0872 at 995.302 kb on + strand, within Psyr_0872 at 995.303 kb on - strand, within Psyr_0872 at 995.303 kb on - strand, within Psyr_0872 at 995.303 kb on - strand, within Psyr_0872 at 995.365 kb on + strand, within Psyr_0872 at 995.518 kb on - strand, within Psyr_0872 at 995.518 kb on - strand, within Psyr_0872 at 995.518 kb on - strand, within Psyr_0872 at 995.577 kb on + strand, within Psyr_0872 at 995.578 kb on - strand, within Psyr_0872 at 995.578 kb on - strand, within Psyr_0872 at 995.578 kb on - strand, within Psyr_0872 at 995.686 kb on - strand at 995.784 kb on + strand at 995.785 kb on - strand at 995.785 kb on - strand at 995.785 kb on - strand at 995.785 kb on - strand at 995.785 kb on - strand at 995.785 kb on - strand at 995.785 kb on - strand at 995.785 kb on - strand at 995.866 kb on - strand at 995.935 kb on + strand, within Psyr_0873 at 995.946 kb on + strand, within Psyr_0873 at 995.946 kb on + strand, within Psyr_0873 at 995.946 kb on + strand, within Psyr_0873 at 995.946 kb on + strand, within Psyr_0873 at 995.946 kb on + strand, within Psyr_0873 at 995.946 kb on + strand, within Psyr_0873 at 995.946 kb on + strand, within Psyr_0873 at 995.946 kb on + strand, within Psyr_0873 at 995.947 kb on - strand, within Psyr_0873 at 995.947 kb on - strand, within Psyr_0873 at 995.947 kb on - strand, within Psyr_0873 at 996.058 kb on + strand, within Psyr_0873 at 996.383 kb on - strand at 996.481 kb on + strand at 996.481 kb on + strand at 996.482 kb on - strand at 996.482 kb on - strand at 996.497 kb on + strand at 996.497 kb on + strand at 996.497 kb on + strand at 996.497 kb on + strand at 996.498 kb on - strand at 996.498 kb on - strand at 996.498 kb on - strand at 996.498 kb on - strand at 996.498 kb on - strand at 996.498 kb on - strand at 996.498 kb on - strand at 996.498 kb on - strand at 996.503 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.525 kb on + strand at 996.525 kb on + strand at 996.525 kb on + strand at 996.525 kb on + strand at 996.536 kb on + strand at 996.536 kb on + strand at 996.537 kb on - strand at 996.567 kb on + strand at 996.567 kb on + strand at 996.567 kb on + strand at 996.567 kb on + strand at 996.568 kb on - strand at 996.568 kb on - strand at 996.568 kb on - strand at 996.583 kb on - strand at 996.625 kb on + strand at 996.696 kb on + strand, within Psyr_0874 at 996.702 kb on + strand, within Psyr_0874 at 996.703 kb on - strand, within Psyr_0874 at 996.703 kb on - strand, within Psyr_0874 at 996.819 kb on + strand, within Psyr_0874 at 996.820 kb on - strand, within Psyr_0874 at 996.820 kb on - strand, within Psyr_0874 at 996.910 kb on + strand, within Psyr_0874 at 996.911 kb on - strand, within Psyr_0874 at 996.952 kb on + strand, within Psyr_0874 at 996.952 kb on + strand, within Psyr_0874 at 996.953 kb on - strand, within Psyr_0874 at 996.953 kb on - strand, within Psyr_0874 at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.019 kb on - strand at 997.019 kb on - strand at 997.019 kb on - strand at 997.019 kb on - strand at 997.019 kb on - strand at 997.034 kb on + strand at 997.034 kb on + strand at 997.034 kb on + strand at 997.035 kb on - strand at 997.035 kb on - strand at 997.035 kb on - strand at 997.344 kb on + strand, within Psyr_0875 at 997.344 kb on + strand, within Psyr_0875 at 997.345 kb on - strand, within Psyr_0875
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 994,975 + Psyr_0872 0.45 +0.8 994,975 + Psyr_0872 0.45 -0.2 994,976 - Psyr_0872 0.45 -1.1 994,979 + Psyr_0872 0.45 +0.7 994,979 + Psyr_0872 0.45 +0.0 994,980 - Psyr_0872 0.45 +0.5 995,033 - Psyr_0872 0.48 -0.9 995,033 - +0.2 995,033 - Psyr_0872 0.48 +0.1 995,113 + Psyr_0872 0.53 -0.3 995,114 - Psyr_0872 0.54 -1.3 995,198 - Psyr_0872 0.59 -0.7 995,198 - Psyr_0872 0.59 +0.3 995,198 - Psyr_0872 0.59 -0.8 995,283 + Psyr_0872 0.64 -1.7 995,284 - Psyr_0872 0.64 -1.0 995,296 + Psyr_0872 0.65 -0.1 995,296 + Psyr_0872 0.65 +0.7 995,296 + Psyr_0872 0.65 +0.8 995,296 + Psyr_0872 0.65 -2.1 995,297 - Psyr_0872 0.65 -0.1 995,297 - Psyr_0872 0.65 -1.9 995,297 - Psyr_0872 0.65 -0.5 995,297 - Psyr_0872 0.65 +1.5 995,297 - Psyr_0872 0.65 +0.7 995,297 - Psyr_0872 0.65 -0.2 995,297 - Psyr_0872 0.65 -1.4 995,297 - Psyr_0872 0.65 +0.7 995,297 - Psyr_0872 0.65 -0.9 995,297 - Psyr_0872 0.65 -0.8 995,297 - Psyr_0872 0.65 +1.0 995,302 + Psyr_0872 0.66 +0.3 995,302 + Psyr_0872 0.66 +1.2 995,303 - Psyr_0872 0.66 -1.4 995,303 - Psyr_0872 0.66 -0.5 995,303 - Psyr_0872 0.66 +0.5 995,365 + Psyr_0872 0.70 +0.0 995,518 - Psyr_0872 0.79 +0.4 995,518 - Psyr_0872 0.79 -1.1 995,518 - Psyr_0872 0.79 -0.7 995,577 + Psyr_0872 0.83 -0.6 995,578 - Psyr_0872 0.83 -0.3 995,578 - Psyr_0872 0.83 -0.2 995,578 - Psyr_0872 0.83 -0.0 995,686 - -1.0 995,784 + +0.7 995,785 - +0.4 995,785 - -1.8 995,785 - +0.6 995,785 - -0.8 995,785 - +0.3 995,785 - -0.2 995,785 - +0.5 995,785 - -0.5 995,866 - -1.8 995,935 + Psyr_0873 0.17 +1.1 995,946 + Psyr_0873 0.19 +2.5 995,946 + Psyr_0873 0.19 +0.4 995,946 + Psyr_0873 0.19 +0.9 995,946 + Psyr_0873 0.19 +0.8 995,946 + Psyr_0873 0.19 +0.1 995,946 + Psyr_0873 0.19 +0.1 995,946 + Psyr_0873 0.19 +0.6 995,946 + Psyr_0873 0.19 -0.2 995,947 - Psyr_0873 0.19 +0.2 995,947 - Psyr_0873 0.19 -1.1 995,947 - Psyr_0873 0.19 -0.2 996,058 + Psyr_0873 0.39 +0.6 996,383 - -0.4 996,481 + -0.4 996,481 + +0.3 996,482 - -0.1 996,482 - -0.4 996,497 + -0.5 996,497 + +0.1 996,497 + +0.5 996,497 + -0.7 996,498 - -0.8 996,498 - +0.1 996,498 - -0.3 996,498 - -0.1 996,498 - +0.1 996,498 - -0.5 996,498 - +0.6 996,498 - -2.0 996,503 + -0.7 996,514 + +1.0 996,514 + +0.1 996,514 + -0.1 996,514 + -0.7 996,514 + +0.9 996,514 + +1.1 996,514 + +2.2 996,514 + -1.0 996,514 + -1.2 996,514 + +0.2 996,514 + -0.4 996,514 + +0.1 996,514 + -0.9 996,514 + +0.5 996,514 + +1.8 996,515 - +0.3 996,515 - +0.0 996,515 - -1.0 996,515 - -0.3 996,515 - -0.9 996,515 - +0.0 996,515 - +0.1 996,525 + +0.5 996,525 + -0.4 996,525 + -1.5 996,525 + +0.7 996,536 + -0.2 996,536 + -0.4 996,537 - -0.2 996,567 + +0.4 996,567 + +0.4 996,567 + -0.0 996,567 + -0.7 996,568 - +0.4 996,568 - +0.0 996,568 - +0.3 996,583 - -1.1 996,625 + +0.5 996,696 + Psyr_0874 0.22 -0.1 996,702 + Psyr_0874 0.24 -2.3 996,703 - Psyr_0874 0.24 +0.2 996,703 - Psyr_0874 0.24 -1.9 996,819 + Psyr_0874 0.52 -0.0 996,820 - Psyr_0874 0.53 +0.5 996,820 - Psyr_0874 0.53 -2.0 996,910 + Psyr_0874 0.75 -1.6 996,911 - Psyr_0874 0.75 +0.1 996,952 + Psyr_0874 0.85 -0.8 996,952 + Psyr_0874 0.85 +0.7 996,953 - Psyr_0874 0.85 -0.2 996,953 - Psyr_0874 0.85 +0.5 997,018 + -1.1 997,018 + -1.6 997,018 + +0.2 997,018 + +0.4 997,019 - -0.5 997,019 - -1.3 997,019 - +0.8 997,019 - -1.3 997,019 - +1.0 997,034 + -0.6 997,034 + -1.4 997,034 + +0.6 997,035 - -0.6 997,035 - -0.4 997,035 - -0.7 997,344 + Psyr_0875 0.43 -1.8 997,344 + Psyr_0875 0.43 +0.2 997,345 - Psyr_0875 0.43 -1.4
Or see this region's nucleotide sequence