Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0731

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0729 and Psyr_0730 overlap by 59 nucleotidesPsyr_0730 and Psyr_0731 overlap by 4 nucleotidesPsyr_0731 and Psyr_0732 are separated by 60 nucleotidesPsyr_0732 and Psyr_0733 overlap by 8 nucleotides Psyr_0729: Psyr_0729 - CDS, at 835,946 to 837,109 _0729 Psyr_0730: Psyr_0730 - CDS, at 837,051 to 837,347 _0730 Psyr_0731: Psyr_0731 - CDS, at 837,344 to 838,102 _0731 Psyr_0732: Psyr_0732 - CDS, at 838,163 to 838,300 _0732 Psyr_0733: Psyr_0733 - Relaxase, at 838,293 to 839,249 _0733 Position (kb) 837 838 839Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 836.369 kb on - strand, within Psyr_0729at 836.696 kb on + strand, within Psyr_0729at 836.741 kb on - strand, within Psyr_0729at 836.847 kb on - strand, within Psyr_0729at 836.938 kb on + strand, within Psyr_0729at 836.938 kb on + strand, within Psyr_0729at 837.065 kb on + strandat 837.065 kb on + strandat 837.065 kb on + strandat 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.115 kb on + strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.116 kb on - strand, within Psyr_0730at 837.117 kb on + strand, within Psyr_0730at 837.117 kb on + strand, within Psyr_0730at 837.117 kb on + strand, within Psyr_0730at 837.117 kb on + strand, within Psyr_0730at 837.117 kb on + strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.118 kb on - strand, within Psyr_0730at 837.140 kb on - strand, within Psyr_0730at 837.140 kb on - strand, within Psyr_0730at 837.140 kb on - strand, within Psyr_0730at 837.140 kb on - strand, within Psyr_0730at 837.140 kb on - strand, within Psyr_0730at 837.593 kb on + strand, within Psyr_0731at 837.593 kb on + strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.594 kb on - strand, within Psyr_0731at 837.627 kb on - strand, within Psyr_0731at 837.627 kb on - strand, within Psyr_0731at 837.627 kb on - strand, within Psyr_0731at 838.003 kb on + strand, within Psyr_0731at 838.037 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.135 kb on - strandat 838.294 kb on + strandat 838.295 kb on - strandat 838.343 kb on + strandat 838.343 kb on + strandat 838.343 kb on + strandat 838.343 kb on + strandat 838.343 kb on + strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.344 kb on - strandat 838.360 kb on - strandat 838.360 kb on - strandat 838.360 kb on - strandat 838.508 kb on + strand, within Psyr_0733at 838.508 kb on + strand, within Psyr_0733at 838.508 kb on + strand, within Psyr_0733at 838.508 kb on + strand, within Psyr_0733at 838.508 kb on + strand, within Psyr_0733at 838.508 kb on + strand, within Psyr_0733at 838.509 kb on - strand, within Psyr_0733at 838.509 kb on - strand, within Psyr_0733at 838.509 kb on - strand, within Psyr_0733at 838.509 kb on - strand, within Psyr_0733at 838.509 kb on - strand, within Psyr_0733at 838.509 kb on - strand, within Psyr_0733at 838.597 kb on + strand, within Psyr_0733at 838.689 kb on + strand, within Psyr_0733at 838.689 kb on + strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.699 kb on + strand, within Psyr_0733at 838.699 kb on + strand, within Psyr_0733at 838.699 kb on + strandat 838.699 kb on + strand, within Psyr_0733at 838.699 kb on + strand, within Psyr_0733at 838.699 kb on + strand, within Psyr_0733at 838.700 kb on - strand, within Psyr_0733at 838.700 kb on - strand, within Psyr_0733at 838.700 kb on - strand, within Psyr_0733at 838.700 kb on - strand, within Psyr_0733at 838.726 kb on - strand, within Psyr_0733at 838.751 kb on - strand, within Psyr_0733at 838.751 kb on - strand, within Psyr_0733at 838.751 kb on - strand, within Psyr_0733at 838.763 kb on - strand, within Psyr_0733at 838.830 kb on + strand, within Psyr_0733at 838.830 kb on + strand, within Psyr_0733at 838.939 kb on + strand, within Psyr_0733at 838.939 kb on + strand, within Psyr_0733at 838.940 kb on - strand, within Psyr_0733at 838.940 kb on - strand, within Psyr_0733at 838.940 kb on - strand, within Psyr_0733at 838.940 kb on - strand, within Psyr_0733at 838.964 kb on - strand, within Psyr_0733at 839.005 kb on + strand, within Psyr_0733at 839.005 kb on + strand, within Psyr_0733at 839.005 kb on + strand, within Psyr_0733at 839.005 kb on + strand, within Psyr_0733at 839.006 kb on - strand, within Psyr_0733at 839.006 kb on - strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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836,369 - Psyr_0729 0.36 +1.6
836,696 + Psyr_0729 0.64 -1.5
836,741 - Psyr_0729 0.68 +0.3
836,847 - Psyr_0729 0.77 -0.9
836,938 + Psyr_0729 0.85 +0.3
836,938 + Psyr_0729 0.85 +0.2
837,065 + +0.3
837,065 + +1.5
837,065 + +0.9
837,115 + Psyr_0730 0.22 -2.1
837,115 + Psyr_0730 0.22 +0.9
837,115 + Psyr_0730 0.22 +0.2
837,115 + Psyr_0730 0.22 -0.5
837,115 + Psyr_0730 0.22 -0.4
837,115 + Psyr_0730 0.22 -1.4
837,115 + Psyr_0730 0.22 +0.2
837,115 + Psyr_0730 0.22 +1.8
837,115 + Psyr_0730 0.22 -0.5
837,115 + Psyr_0730 0.22 -1.1
837,115 + Psyr_0730 0.22 +1.2
837,115 + Psyr_0730 0.22 -0.2
837,115 + Psyr_0730 0.22 +0.3
837,116 - Psyr_0730 0.22 +0.5
837,116 - Psyr_0730 0.22 -0.2
837,116 - Psyr_0730 0.22 +0.4
837,116 - Psyr_0730 0.22 +0.4
837,116 - Psyr_0730 0.22 -0.5
837,116 - Psyr_0730 0.22 +0.9
837,116 - Psyr_0730 0.22 +0.3
837,116 - Psyr_0730 0.22 -1.7
837,116 - Psyr_0730 0.22 -0.4
837,116 - Psyr_0730 0.22 +0.5
837,116 - Psyr_0730 0.22 -1.0
837,116 - Psyr_0730 0.22 +0.1
837,116 - Psyr_0730 0.22 -0.4
837,116 - Psyr_0730 0.22 -0.2
837,116 - Psyr_0730 0.22 +0.8
837,116 - Psyr_0730 0.22 +0.6
837,116 - Psyr_0730 0.22 +0.2
837,117 + Psyr_0730 0.22 -0.9
837,117 + Psyr_0730 0.22 -1.1
837,117 + Psyr_0730 0.22 -0.7
837,117 + Psyr_0730 0.22 +0.0
837,117 + Psyr_0730 0.22 -0.3
837,118 - Psyr_0730 0.23 +0.0
837,118 - Psyr_0730 0.23 -0.8
837,118 - Psyr_0730 0.23 -0.0
837,118 - Psyr_0730 0.23 -0.0
837,118 - Psyr_0730 0.23 +0.4
837,118 - Psyr_0730 0.23 -0.7
837,118 - Psyr_0730 0.23 -0.2
837,118 - Psyr_0730 0.23 +0.6
837,118 - Psyr_0730 0.23 +0.2
837,118 - Psyr_0730 0.23 +0.8
837,118 - Psyr_0730 0.23 +0.4
837,118 - Psyr_0730 0.23 -0.2
837,140 - Psyr_0730 0.30 -0.8
837,140 - Psyr_0730 0.30 +0.3
837,140 - Psyr_0730 0.30 -0.6
837,140 - Psyr_0730 0.30 -0.4
837,140 - Psyr_0730 0.30 -0.6
837,593 + Psyr_0731 0.33 +0.3
837,593 + Psyr_0731 0.33 +0.4
837,594 - Psyr_0731 0.33 +0.4
837,594 - Psyr_0731 0.33 +1.2
837,594 - Psyr_0731 0.33 -0.7
837,594 - Psyr_0731 0.33 +4.7
837,594 - Psyr_0731 0.33 -0.8
837,594 - Psyr_0731 0.33 -1.0
837,594 - Psyr_0731 0.33 -0.9
837,627 - Psyr_0731 0.37 -0.4
837,627 - Psyr_0731 0.37 -0.5
837,627 - Psyr_0731 0.37 +0.6
838,003 + Psyr_0731 0.87 -0.1
838,037 - -0.9
838,135 - -0.5
838,135 - -0.7
838,135 - -2.3
838,135 - +0.1
838,135 - -0.2
838,135 - -0.5
838,135 - +1.2
838,135 - +1.4
838,135 - +1.4
838,135 - -1.1
838,135 - +0.1
838,294 + +0.2
838,295 - +0.7
838,343 + -1.0
838,343 + -0.4
838,343 + +0.4
838,343 + -1.2
838,343 + -0.0
838,344 - -3.2
838,344 - -2.0
838,344 - -0.2
838,344 - -0.0
838,344 - -1.0
838,344 - -0.8
838,344 - -1.7
838,344 - -2.1
838,360 - -2.0
838,360 - -1.0
838,360 - -1.0
838,508 + Psyr_0733 0.22 -2.6
838,508 + Psyr_0733 0.22 +0.3
838,508 + Psyr_0733 0.22 +0.9
838,508 + Psyr_0733 0.22 +0.6
838,508 + Psyr_0733 0.22 +0.3
838,508 + Psyr_0733 0.22 +0.2
838,509 - Psyr_0733 0.23 -0.8
838,509 - Psyr_0733 0.23 -0.8
838,509 - Psyr_0733 0.23 +1.5
838,509 - Psyr_0733 0.23 -1.0
838,509 - Psyr_0733 0.23 +0.2
838,509 - Psyr_0733 0.23 +0.6
838,597 + Psyr_0733 0.32 -0.8
838,689 + Psyr_0733 0.41 +0.7
838,689 + Psyr_0733 0.41 -0.1
838,690 - Psyr_0733 0.41 +0.0
838,690 - Psyr_0733 0.41 +0.4
838,690 - Psyr_0733 0.41 -1.4
838,690 - Psyr_0733 0.41 -0.7
838,690 - Psyr_0733 0.41 -0.3
838,690 - Psyr_0733 0.41 +1.0
838,690 - Psyr_0733 0.41 -0.2
838,699 + Psyr_0733 0.42 -0.0
838,699 + Psyr_0733 0.42 -0.4
838,699 + +1.2
838,699 + Psyr_0733 0.42 +1.2
838,699 + Psyr_0733 0.42 -0.1
838,699 + Psyr_0733 0.42 +0.1
838,700 - Psyr_0733 0.43 -0.1
838,700 - Psyr_0733 0.43 +0.4
838,700 - Psyr_0733 0.43 +0.5
838,700 - Psyr_0733 0.43 -0.2
838,726 - Psyr_0733 0.45 +1.6
838,751 - Psyr_0733 0.48 -0.6
838,751 - Psyr_0733 0.48 +0.3
838,751 - Psyr_0733 0.48 -0.4
838,763 - Psyr_0733 0.49 +0.9
838,830 + Psyr_0733 0.56 +2.0
838,830 + Psyr_0733 0.56 +0.2
838,939 + Psyr_0733 0.68 -0.8
838,939 + Psyr_0733 0.68 +0.5
838,940 - Psyr_0733 0.68 -1.3
838,940 - Psyr_0733 0.68 +1.5
838,940 - Psyr_0733 0.68 -0.1
838,940 - Psyr_0733 0.68 -0.8
838,964 - Psyr_0733 0.70 +0.3
839,005 + Psyr_0733 0.74 +0.7
839,005 + Psyr_0733 0.74 -0.5
839,005 + Psyr_0733 0.74 -0.5
839,005 + Psyr_0733 0.74 +0.6
839,006 - Psyr_0733 0.75 +0.2
839,006 - Psyr_0733 0.75 -0.5
839,077 + Psyr_0733 0.82 +0.2
839,077 + Psyr_0733 0.82 +0.6
839,077 + Psyr_0733 0.82 +0.4
839,077 + Psyr_0733 0.82 +0.2
839,077 + Psyr_0733 0.82 -1.6
839,077 + Psyr_0733 0.82 +0.5
839,077 + Psyr_0733 0.82 +0.1
839,077 + Psyr_0733 0.82 +0.3

Or see this region's nucleotide sequence