Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0628 and Psyr_0629 are separated by 431 nucleotides Psyr_0629 and Psyr_0630 are separated by 225 nucleotides
Psyr_0628: Psyr_0628 - Ethanolamine ammonia-lyase heavy chain, at 716,978 to 718,372
_0628
Psyr_0629: Psyr_0629 - Aldehyde dehydrogenase (NAD+), at 718,804 to 720,324
_0629
Psyr_0630: Psyr_0630 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 720,550 to 721,899
_0630
Position (kb) 718
719
720
721 Strain fitness (log2 ratio) -2
-1
0
1
2 at 717.823 kb on - strand, within Psyr_0628 at 718.211 kb on - strand, within Psyr_0628 at 718.275 kb on + strand at 718.276 kb on - strand at 718.372 kb on + strand at 718.452 kb on + strand at 718.466 kb on + strand at 718.466 kb on + strand at 718.466 kb on + strand at 718.466 kb on + strand at 718.467 kb on - strand at 718.467 kb on - strand at 718.467 kb on - strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.477 kb on + strand at 718.477 kb on + strand at 718.477 kb on + strand at 718.478 kb on - strand at 718.537 kb on + strand at 718.537 kb on + strand at 718.537 kb on + strand at 718.537 kb on + strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.612 kb on + strand at 718.626 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.693 kb on - strand at 718.693 kb on - strand at 718.709 kb on + strand at 718.710 kb on - strand at 718.722 kb on - strand at 718.722 kb on - strand at 718.763 kb on + strand at 718.764 kb on - strand at 718.801 kb on + strand at 718.801 kb on + strand at 718.802 kb on - strand at 718.802 kb on - strand at 718.802 kb on - strand at 718.805 kb on + strand at 718.805 kb on + strand at 718.805 kb on + strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.833 kb on - strand at 718.833 kb on - strand at 718.833 kb on - strand at 718.913 kb on + strand at 718.913 kb on + strand at 718.998 kb on - strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.261 kb on + strand, within Psyr_0629 at 719.854 kb on + strand, within Psyr_0629 at 719.879 kb on + strand, within Psyr_0629 at 719.879 kb on + strand, within Psyr_0629 at 719.880 kb on - strand, within Psyr_0629 at 719.890 kb on - strand, within Psyr_0629 at 720.221 kb on + strand at 720.221 kb on + strand at 720.221 kb on + strand at 720.222 kb on - strand at 720.222 kb on - strand at 720.222 kb on - strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.264 kb on + strand at 720.264 kb on + strand at 720.265 kb on - strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.403 kb on + strand at 720.404 kb on - strand at 720.404 kb on - strand at 720.436 kb on + strand at 720.436 kb on + strand at 720.436 kb on + strand at 720.437 kb on - strand at 720.442 kb on + strand at 720.442 kb on + strand at 720.442 kb on + strand at 720.443 kb on - strand at 720.443 kb on - strand at 720.443 kb on - strand at 720.443 kb on - strand at 720.469 kb on - strand at 720.514 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.706 kb on + strand, within Psyr_0630 at 720.706 kb on + strand, within Psyr_0630 at 720.787 kb on + strand, within Psyr_0630 at 720.787 kb on + strand, within Psyr_0630 at 720.787 kb on + strand, within Psyr_0630 at 720.811 kb on + strand, within Psyr_0630 at 721.075 kb on + strand, within Psyr_0630
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 717,823 - Psyr_0628 0.61 -0.6 718,211 - Psyr_0628 0.88 -0.8 718,275 + -1.0 718,276 - +0.2 718,372 + +2.0 718,452 + -1.3 718,466 + +0.5 718,466 + -0.0 718,466 + +1.0 718,466 + +0.5 718,467 - -1.4 718,467 - +1.2 718,467 - -0.6 718,474 + +0.2 718,474 + -1.1 718,474 + +0.0 718,474 + -0.1 718,474 + +1.5 718,475 - +1.0 718,475 - +0.5 718,475 - -1.3 718,475 - -2.2 718,477 + -0.1 718,477 + +0.8 718,477 + +1.2 718,478 - +0.4 718,537 + +0.2 718,537 + +0.1 718,537 + +0.4 718,537 + -0.1 718,538 - +0.2 718,538 - -1.3 718,538 - +0.2 718,538 - -1.1 718,538 - -1.3 718,538 - -0.2 718,538 - -0.9 718,538 - -0.6 718,538 - -2.1 718,538 - -0.6 718,612 + -0.0 718,626 - +0.9 718,628 - +2.2 718,628 - +0.8 718,628 - +0.2 718,628 - -0.2 718,628 - -1.6 718,628 - -0.3 718,628 - +1.2 718,628 - +0.2 718,628 - +1.0 718,693 - +1.9 718,693 - -1.3 718,709 + +0.2 718,710 - -0.4 718,722 - -0.2 718,722 - +0.7 718,763 + +0.0 718,764 - +1.4 718,801 + +1.0 718,801 + +0.5 718,802 - -0.1 718,802 - -0.1 718,802 - +0.9 718,805 + +1.6 718,805 + +0.2 718,805 + +1.2 718,806 - -0.3 718,806 - +0.2 718,806 - -0.2 718,806 - +1.2 718,806 - +0.5 718,806 - +0.4 718,832 + -0.1 718,832 + +0.4 718,832 + +0.9 718,832 + +0.6 718,832 + +1.0 718,833 - -0.0 718,833 - -0.1 718,833 - -0.3 718,913 + -0.4 718,913 + -0.9 718,998 - Psyr_0629 0.13 -0.5 719,174 + Psyr_0629 0.24 +0.7 719,174 + Psyr_0629 0.24 +0.2 719,174 + Psyr_0629 0.24 -1.6 719,174 + Psyr_0629 0.24 +1.3 719,174 + Psyr_0629 0.24 +0.1 719,174 + Psyr_0629 0.24 +0.0 719,174 + Psyr_0629 0.24 -0.9 719,174 + Psyr_0629 0.24 -0.0 719,174 + Psyr_0629 0.24 -0.3 719,174 + Psyr_0629 0.24 -0.2 719,174 + Psyr_0629 0.24 -0.3 719,174 + Psyr_0629 0.24 +0.0 719,175 - Psyr_0629 0.24 +0.3 719,175 - Psyr_0629 0.24 +0.7 719,175 - Psyr_0629 0.24 +0.2 719,175 - Psyr_0629 0.24 +1.2 719,175 - Psyr_0629 0.24 +1.3 719,175 - Psyr_0629 0.24 +0.6 719,175 - Psyr_0629 0.24 +1.0 719,175 - Psyr_0629 0.24 -0.4 719,261 + Psyr_0629 0.30 -0.6 719,854 + Psyr_0629 0.69 +1.0 719,879 + Psyr_0629 0.71 -0.4 719,879 + Psyr_0629 0.71 -0.2 719,880 - Psyr_0629 0.71 +0.4 719,890 - Psyr_0629 0.71 -0.4 720,221 + +0.4 720,221 + -0.1 720,221 + +0.1 720,222 - -0.8 720,222 - -0.1 720,222 - -0.8 720,260 + -0.2 720,260 + -0.3 720,260 + +0.0 720,260 + -0.7 720,260 + +0.4 720,260 + -0.1 720,261 - -0.1 720,261 - +0.4 720,261 - -0.1 720,261 - -1.1 720,261 - +0.5 720,261 - -0.5 720,261 - -0.7 720,264 + -0.1 720,264 + -1.7 720,265 - -0.2 720,327 + +0.4 720,327 + +1.0 720,327 + -0.8 720,327 + -0.9 720,327 + -0.2 720,327 + +0.2 720,327 + +0.7 720,327 + -0.9 720,327 + -0.4 720,327 + +0.3 720,327 + +0.6 720,327 + +2.0 720,327 + -1.0 720,328 - -0.9 720,328 - -0.9 720,328 - +0.4 720,328 - -1.1 720,328 - +0.0 720,328 - +0.8 720,328 - -0.8 720,328 - -0.3 720,328 - -0.0 720,328 - +0.1 720,328 - -0.8 720,328 - -2.5 720,328 - -1.3 720,328 - -0.7 720,328 - -0.5 720,328 - -0.5 720,403 + +0.4 720,404 - -0.5 720,404 - -0.3 720,436 + -0.2 720,436 + +0.5 720,436 + -0.1 720,437 - -0.8 720,442 + -0.0 720,442 + +0.2 720,442 + -0.8 720,443 - -1.3 720,443 - -0.2 720,443 - +1.2 720,443 - +0.3 720,469 - -0.8 720,514 + -0.1 720,555 + -0.1 720,555 + -0.8 720,555 + -1.3 720,555 + +1.0 720,555 + -0.1 720,555 + -1.7 720,555 + +0.5 720,555 + +0.8 720,555 + -0.1 720,555 + -0.2 720,555 + +0.6 720,706 + Psyr_0630 0.12 -0.1 720,706 + Psyr_0630 0.12 -0.9 720,787 + Psyr_0630 0.18 +0.1 720,787 + Psyr_0630 0.18 -0.4 720,787 + Psyr_0630 0.18 -0.2 720,811 + Psyr_0630 0.19 +0.2 721,075 + Psyr_0630 0.39 +0.5
Or see this region's nucleotide sequence