Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0595 and Psyr_0596 are separated by 99 nucleotides Psyr_0596 and Psyr_0597 are separated by 499 nucleotides
Psyr_0595: Psyr_0595 - Nicotinate phosphoribosyltransferase, at 682,976 to 684,199
_0595
Psyr_0596: Psyr_0596 - transcriptional regulator, LysR family, at 684,299 to 685,204
_0596
Psyr_0597: Psyr_0597 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 685,704 to 686,840
_0597
Position (kb) 684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 683.373 kb on + strand, within Psyr_0595 at 683.374 kb on - strand, within Psyr_0595 at 683.374 kb on - strand, within Psyr_0595 at 683.742 kb on + strand, within Psyr_0595 at 683.743 kb on - strand, within Psyr_0595 at 683.743 kb on - strand, within Psyr_0595 at 683.996 kb on + strand, within Psyr_0595 at 684.106 kb on - strand at 684.142 kb on - strand at 684.142 kb on - strand at 684.142 kb on - strand at 684.390 kb on + strand, within Psyr_0596 at 684.390 kb on + strand, within Psyr_0596 at 684.390 kb on + strand at 684.390 kb on + strand, within Psyr_0596 at 684.390 kb on + strand, within Psyr_0596 at 684.391 kb on - strand, within Psyr_0596 at 684.391 kb on - strand, within Psyr_0596 at 684.391 kb on - strand, within Psyr_0596 at 684.393 kb on + strand, within Psyr_0596 at 684.394 kb on - strand, within Psyr_0596 at 684.404 kb on - strand, within Psyr_0596 at 684.421 kb on - strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.571 kb on - strand, within Psyr_0596 at 684.759 kb on + strand, within Psyr_0596 at 684.759 kb on + strand, within Psyr_0596 at 684.760 kb on - strand, within Psyr_0596 at 684.760 kb on - strand, within Psyr_0596 at 685.241 kb on + strand at 685.241 kb on + strand at 685.242 kb on - strand at 685.255 kb on - strand at 685.267 kb on - strand at 685.295 kb on + strand at 685.295 kb on + strand at 685.295 kb on + strand at 685.295 kb on + strand at 685.295 kb on + strand at 685.295 kb on + strand at 685.296 kb on - strand at 685.296 kb on - strand at 685.296 kb on - strand at 685.296 kb on - strand at 685.296 kb on - strand at 685.308 kb on + strand at 685.308 kb on + strand at 685.309 kb on - strand at 685.311 kb on + strand at 685.311 kb on + strand at 685.444 kb on + strand at 685.444 kb on + strand at 685.482 kb on - strand at 685.649 kb on + strand at 685.649 kb on + strand at 685.650 kb on - strand at 685.650 kb on - strand at 685.684 kb on + strand at 685.685 kb on - strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.703 kb on + strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.704 kb on - strand at 685.712 kb on + strand at 685.713 kb on - strand at 685.713 kb on - strand at 685.713 kb on - strand at 685.719 kb on + strand at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.845 kb on + strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 685.846 kb on - strand, within Psyr_0597 at 686.049 kb on + strand, within Psyr_0597 at 686.049 kb on + strand, within Psyr_0597 at 686.049 kb on + strand, within Psyr_0597 at 686.050 kb on - strand, within Psyr_0597 at 686.050 kb on - strand, within Psyr_0597 at 686.050 kb on - strand, within Psyr_0597 at 686.050 kb on - strand, within Psyr_0597 at 686.076 kb on - strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.123 kb on + strand, within Psyr_0597 at 686.124 kb on - strand, within Psyr_0597 at 686.124 kb on - strand, within Psyr_0597 at 686.124 kb on - strand, within Psyr_0597 at 686.124 kb on - strand, within Psyr_0597 at 686.124 kb on - strand, within Psyr_0597 at 686.124 kb on - strand, within Psyr_0597 at 686.175 kb on + strand, within Psyr_0597 at 686.175 kb on + strand, within Psyr_0597 at 686.175 kb on + strand, within Psyr_0597 at 686.175 kb on + strand, within Psyr_0597 at 686.175 kb on + strand, within Psyr_0597 at 686.176 kb on - strand, within Psyr_0597 at 686.176 kb on - strand, within Psyr_0597 at 686.176 kb on - strand, within Psyr_0597 at 686.176 kb on - strand, within Psyr_0597 at 686.176 kb on - strand, within Psyr_0597
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 683,373 + Psyr_0595 0.32 +2.1 683,374 - Psyr_0595 0.33 -0.6 683,374 - Psyr_0595 0.33 +0.1 683,742 + Psyr_0595 0.63 -1.2 683,743 - Psyr_0595 0.63 +0.2 683,743 - Psyr_0595 0.63 +0.2 683,996 + Psyr_0595 0.83 -0.5 684,106 - -0.3 684,142 - -1.1 684,142 - -0.3 684,142 - -1.9 684,390 + Psyr_0596 0.10 +0.4 684,390 + Psyr_0596 0.10 +1.5 684,390 + +0.2 684,390 + Psyr_0596 0.10 +1.1 684,390 + Psyr_0596 0.10 +1.1 684,391 - Psyr_0596 0.10 -2.5 684,391 - Psyr_0596 0.10 +2.0 684,391 - Psyr_0596 0.10 +0.2 684,393 + Psyr_0596 0.10 -1.4 684,394 - Psyr_0596 0.10 +0.7 684,404 - Psyr_0596 0.12 +0.3 684,421 - Psyr_0596 0.13 +0.1 684,523 + Psyr_0596 0.25 +1.4 684,523 + Psyr_0596 0.25 -0.1 684,523 + Psyr_0596 0.25 +0.7 684,523 + Psyr_0596 0.25 -2.6 684,523 + Psyr_0596 0.25 +0.2 684,523 + Psyr_0596 0.25 +0.5 684,523 + Psyr_0596 0.25 -0.3 684,523 + Psyr_0596 0.25 +2.2 684,523 + Psyr_0596 0.25 +0.2 684,523 + Psyr_0596 0.25 +0.4 684,523 + Psyr_0596 0.25 -0.1 684,523 + Psyr_0596 0.25 -0.1 684,523 + Psyr_0596 0.25 +0.2 684,523 + Psyr_0596 0.25 -0.4 684,524 - Psyr_0596 0.25 -3.1 684,524 - Psyr_0596 0.25 +0.2 684,524 - Psyr_0596 0.25 -1.6 684,524 - Psyr_0596 0.25 -0.8 684,524 - Psyr_0596 0.25 +1.8 684,524 - Psyr_0596 0.25 +0.4 684,524 - Psyr_0596 0.25 +1.0 684,524 - Psyr_0596 0.25 -1.2 684,524 - Psyr_0596 0.25 +0.1 684,524 - Psyr_0596 0.25 +0.6 684,524 - Psyr_0596 0.25 +0.1 684,524 - Psyr_0596 0.25 +2.8 684,524 - Psyr_0596 0.25 +0.1 684,524 - Psyr_0596 0.25 +1.2 684,524 - Psyr_0596 0.25 +0.5 684,524 - Psyr_0596 0.25 +0.6 684,524 - Psyr_0596 0.25 -1.1 684,524 - Psyr_0596 0.25 +0.4 684,524 - Psyr_0596 0.25 +0.7 684,525 + Psyr_0596 0.25 -1.0 684,525 + Psyr_0596 0.25 -0.9 684,525 + Psyr_0596 0.25 +0.1 684,525 + Psyr_0596 0.25 -1.6 684,525 + Psyr_0596 0.25 -0.8 684,525 + Psyr_0596 0.25 -1.2 684,525 + Psyr_0596 0.25 +0.4 684,525 + Psyr_0596 0.25 +0.4 684,525 + Psyr_0596 0.25 +0.4 684,525 + Psyr_0596 0.25 -0.8 684,525 + Psyr_0596 0.25 -1.3 684,525 + Psyr_0596 0.25 +1.0 684,525 + Psyr_0596 0.25 +0.2 684,525 + Psyr_0596 0.25 -0.1 684,525 + Psyr_0596 0.25 -0.1 684,525 + Psyr_0596 0.25 +0.6 684,525 + Psyr_0596 0.25 +0.8 684,525 + Psyr_0596 0.25 +0.0 684,525 + Psyr_0596 0.25 +1.4 684,525 + Psyr_0596 0.25 +0.4 684,525 + Psyr_0596 0.25 -0.8 684,526 - Psyr_0596 0.25 +0.9 684,526 - Psyr_0596 0.25 -0.2 684,526 - Psyr_0596 0.25 +0.2 684,526 - Psyr_0596 0.25 -0.6 684,526 - Psyr_0596 0.25 +1.2 684,526 - Psyr_0596 0.25 +0.6 684,526 - Psyr_0596 0.25 -0.3 684,526 - Psyr_0596 0.25 +0.0 684,526 - Psyr_0596 0.25 +1.6 684,526 - Psyr_0596 0.25 +0.2 684,526 - Psyr_0596 0.25 +0.2 684,526 - Psyr_0596 0.25 -1.0 684,526 - Psyr_0596 0.25 -0.2 684,526 - Psyr_0596 0.25 -0.4 684,526 - Psyr_0596 0.25 -2.0 684,526 - Psyr_0596 0.25 -1.3 684,526 - Psyr_0596 0.25 +0.6 684,526 - Psyr_0596 0.25 -0.0 684,526 - Psyr_0596 0.25 -1.5 684,526 - Psyr_0596 0.25 -0.8 684,526 - Psyr_0596 0.25 -0.1 684,526 - Psyr_0596 0.25 +0.2 684,526 - Psyr_0596 0.25 +0.6 684,526 - Psyr_0596 0.25 +1.1 684,526 - Psyr_0596 0.25 -0.6 684,526 - Psyr_0596 0.25 -0.3 684,526 - Psyr_0596 0.25 +0.7 684,526 - Psyr_0596 0.25 +2.2 684,571 - Psyr_0596 0.30 +1.7 684,759 + Psyr_0596 0.51 +1.1 684,759 + Psyr_0596 0.51 +0.8 684,760 - Psyr_0596 0.51 -0.2 684,760 - Psyr_0596 0.51 +0.9 685,241 + -0.5 685,241 + +1.7 685,242 - -0.9 685,255 - +0.5 685,267 - -3.1 685,295 + +1.3 685,295 + +0.3 685,295 + -0.1 685,295 + -0.6 685,295 + +0.5 685,295 + +1.0 685,296 - -0.8 685,296 - +0.3 685,296 - -0.8 685,296 - -0.4 685,296 - +0.3 685,308 + -0.3 685,308 + -0.3 685,309 - -0.1 685,311 + -0.1 685,311 + +0.6 685,444 + +0.0 685,444 + -3.0 685,482 - -3.3 685,649 + +0.0 685,649 + +0.2 685,650 - -1.0 685,650 - -0.1 685,684 + +1.2 685,685 - +0.3 685,703 + -0.9 685,703 + -0.5 685,703 + +0.2 685,703 + -0.2 685,703 + -0.4 685,703 + +0.9 685,703 + +0.5 685,703 + +0.1 685,703 + -0.6 685,703 + +0.1 685,703 + -1.1 685,703 + +1.0 685,703 + +1.8 685,703 + +0.5 685,704 - -0.4 685,704 - +1.1 685,704 - -0.0 685,704 - -0.5 685,704 - -0.3 685,704 - -0.1 685,704 - +1.5 685,704 - +0.2 685,704 - +1.2 685,704 - -2.1 685,704 - +0.6 685,704 - +0.1 685,704 - -0.4 685,704 - -2.6 685,704 - -0.6 685,704 - -0.5 685,704 - -1.3 685,712 + -1.8 685,713 - -2.8 685,713 - -0.5 685,713 - -0.8 685,719 + +0.2 685,845 + Psyr_0597 0.12 -0.1 685,845 + Psyr_0597 0.12 +1.1 685,845 + Psyr_0597 0.12 -0.6 685,845 + Psyr_0597 0.12 +0.5 685,845 + Psyr_0597 0.12 -2.0 685,845 + Psyr_0597 0.12 +0.3 685,845 + Psyr_0597 0.12 +1.4 685,845 + Psyr_0597 0.12 -1.6 685,845 + Psyr_0597 0.12 +1.4 685,845 + Psyr_0597 0.12 -0.4 685,845 + Psyr_0597 0.12 +0.3 685,846 - Psyr_0597 0.12 -0.2 685,846 - Psyr_0597 0.12 -0.3 685,846 - Psyr_0597 0.12 -1.3 685,846 - Psyr_0597 0.12 +0.2 685,846 - Psyr_0597 0.12 -0.3 685,846 - Psyr_0597 0.12 +0.0 685,846 - Psyr_0597 0.12 -1.2 685,846 - Psyr_0597 0.12 +0.2 685,846 - Psyr_0597 0.12 +1.4 685,846 - Psyr_0597 0.12 -1.1 685,846 - Psyr_0597 0.12 -0.5 685,846 - Psyr_0597 0.12 +0.7 685,846 - Psyr_0597 0.12 +0.7 686,049 + Psyr_0597 0.30 +1.0 686,049 + Psyr_0597 0.30 -1.1 686,049 + Psyr_0597 0.30 -0.4 686,050 - Psyr_0597 0.30 -0.1 686,050 - Psyr_0597 0.30 +0.3 686,050 - Psyr_0597 0.30 -1.8 686,050 - Psyr_0597 0.30 -0.5 686,076 - Psyr_0597 0.33 -0.6 686,123 + Psyr_0597 0.37 +0.3 686,123 + Psyr_0597 0.37 -0.6 686,123 + Psyr_0597 0.37 +0.1 686,123 + Psyr_0597 0.37 -0.2 686,123 + Psyr_0597 0.37 +1.9 686,123 + Psyr_0597 0.37 -0.5 686,123 + Psyr_0597 0.37 +1.5 686,123 + Psyr_0597 0.37 -0.1 686,124 - Psyr_0597 0.37 -2.3 686,124 - Psyr_0597 0.37 +0.7 686,124 - Psyr_0597 0.37 +0.4 686,124 - Psyr_0597 0.37 +0.4 686,124 - Psyr_0597 0.37 -2.3 686,124 - Psyr_0597 0.37 +1.0 686,175 + Psyr_0597 0.41 -0.1 686,175 + Psyr_0597 0.41 -0.6 686,175 + Psyr_0597 0.41 +0.2 686,175 + Psyr_0597 0.41 +0.0 686,175 + Psyr_0597 0.41 -0.1 686,176 - Psyr_0597 0.42 +0.5 686,176 - Psyr_0597 0.42 +0.1 686,176 - Psyr_0597 0.42 -0.1 686,176 - Psyr_0597 0.42 -0.0 686,176 - Psyr_0597 0.42 +0.5
Or see this region's nucleotide sequence