Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0490

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0488 and Psyr_0489 are separated by 46 nucleotidesPsyr_0489 and Psyr_0490 are separated by 14 nucleotidesPsyr_0490 and Psyr_0491 are separated by 50 nucleotides Psyr_0488: Psyr_0488 - Response regulator receiver, at 525,474 to 525,884 _0488 Psyr_0489: Psyr_0489 - Response regulator receiver, at 525,931 to 526,296 _0489 Psyr_0490: Psyr_0490 - CheW-like protein, at 526,311 to 526,850 _0490 Psyr_0491: Psyr_0491 - chemotaxis sensory transducer, at 526,901 to 528,943 _0491 Position (kb) 526 527Strain fitness (log2 ratio) -2 -1 0 1 2at 525.360 kb on + strandat 525.360 kb on + strandat 525.360 kb on + strandat 525.637 kb on + strand, within Psyr_0488at 525.637 kb on + strand, within Psyr_0488at 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.879 kb on - strandat 525.900 kb on + strandat 525.900 kb on + strandat 525.900 kb on + strandat 525.900 kb on + strandat 525.912 kb on - strandat 525.912 kb on - strandat 525.973 kb on + strand, within Psyr_0489at 526.156 kb on - strand, within Psyr_0489at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.745 kb on + strand, within Psyr_0490at 526.745 kb on + strand, within Psyr_0490at 526.746 kb on - strand, within Psyr_0490at 526.746 kb on - strand, within Psyr_0490at 526.773 kb on - strand, within Psyr_0490at 526.848 kb on + strandat 526.848 kb on + strandat 526.849 kb on - strandat 526.849 kb on - strandat 526.849 kb on - strandat 526.907 kb on - strandat 526.909 kb on + strandat 526.909 kb on + strandat 526.909 kb on + strandat 526.909 kb on + strandat 526.951 kb on + strandat 526.952 kb on - strandat 527.042 kb on + strandat 527.042 kb on + strandat 527.042 kb on + strandat 527.042 kb on + strandat 527.042 kb on + strandat 527.042 kb on + strandat 527.043 kb on - strandat 527.230 kb on - strand, within Psyr_0491at 527.599 kb on - strand, within Psyr_0491at 527.709 kb on - strand, within Psyr_0491

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
remove
525,360 + +0.7
525,360 + -0.9
525,360 + -0.0
525,637 + Psyr_0488 0.40 -1.3
525,637 + Psyr_0488 0.40 +0.7
525,877 + +0.3
525,877 + -0.3
525,877 + -1.0
525,877 + +0.8
525,877 + +0.7
525,877 + +0.4
525,877 + -0.7
525,877 + +0.4
525,877 + +0.3
525,877 + +0.1
525,877 + +0.4
525,877 + -1.0
525,878 - +0.4
525,878 - -0.6
525,878 - +0.1
525,878 - +0.1
525,878 - +0.8
525,878 - +0.3
525,878 - -2.5
525,878 - +1.1
525,878 - -0.8
525,879 - -0.7
525,900 + +0.5
525,900 + -1.3
525,900 + +0.4
525,900 + +0.3
525,912 - -1.5
525,912 - -0.5
525,973 + Psyr_0489 0.11 -0.7
526,156 - Psyr_0489 0.61 -1.8
526,651 + Psyr_0490 0.63 +0.1
526,651 + Psyr_0490 0.63 +2.0
526,651 + Psyr_0490 0.63 -1.3
526,651 + Psyr_0490 0.63 +0.2
526,651 + Psyr_0490 0.63 +0.6
526,651 + Psyr_0490 0.63 +0.8
526,651 + Psyr_0490 0.63 +0.3
526,651 + Psyr_0490 0.63 -1.3
526,652 - Psyr_0490 0.63 -2.0
526,652 - Psyr_0490 0.63 -0.6
526,652 - Psyr_0490 0.63 -0.3
526,652 - Psyr_0490 0.63 -1.4
526,652 - Psyr_0490 0.63 -1.7
526,745 + Psyr_0490 0.80 -0.0
526,745 + Psyr_0490 0.80 +0.1
526,746 - Psyr_0490 0.81 -1.0
526,746 - Psyr_0490 0.81 -1.8
526,773 - Psyr_0490 0.86 -1.7
526,848 + -0.9
526,848 + +0.1
526,849 - -2.1
526,849 - -0.7
526,849 - +0.2
526,907 - -1.8
526,909 + -0.3
526,909 + -0.0
526,909 + +0.1
526,909 + -0.1
526,951 + +1.1
526,952 - -1.7
527,042 + -0.7
527,042 + +0.3
527,042 + +0.2
527,042 + -0.2
527,042 + +0.5
527,042 + -0.8
527,043 - -1.0
527,230 - Psyr_0491 0.16 -2.0
527,599 - Psyr_0491 0.34 -1.6
527,709 - Psyr_0491 0.40 -1.0

Or see this region's nucleotide sequence