Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0455

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0454 and Psyr_0455 are separated by 209 nucleotidesPsyr_0455 and Psyr_0456 are separated by 357 nucleotidesPsyr_0456 and Psyr_0457 are separated by 27 nucleotides Psyr_0454: Psyr_0454 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme, at 489,548 to 490,954 _0454 Psyr_0455: Psyr_0455 - Amine oxidase, at 491,164 to 493,038 _0455 Psyr_0456: Psyr_0456 - Cytochrome B561, bacterial, at 493,396 to 493,944 _0456 Psyr_0457: Psyr_0457 - YceI, at 493,972 to 494,550 _0457 Position (kb) 491 492 493 494Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 490.245 kb on + strand, within Psyr_0454at 490.245 kb on + strand, within Psyr_0454at 490.257 kb on + strand, within Psyr_0454at 490.257 kb on + strand, within Psyr_0454at 490.257 kb on + strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.402 kb on - strand, within Psyr_0454at 490.450 kb on - strand, within Psyr_0454at 491.010 kb on + strandat 491.051 kb on - strandat 491.077 kb on + strandat 491.133 kb on + strandat 491.134 kb on - strandat 491.134 kb on - strandat 491.142 kb on + strandat 491.143 kb on - strandat 491.199 kb on - strandat 491.293 kb on + strandat 491.294 kb on - strandat 491.479 kb on + strand, within Psyr_0455at 491.480 kb on - strand, within Psyr_0455at 491.480 kb on - strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.557 kb on + strand, within Psyr_0455at 491.558 kb on - strand, within Psyr_0455at 491.558 kb on - strand, within Psyr_0455at 491.756 kb on - strand, within Psyr_0455at 491.780 kb on - strand, within Psyr_0455at 491.947 kb on + strand, within Psyr_0455at 491.947 kb on + strand, within Psyr_0455at 491.947 kb on + strand, within Psyr_0455at 491.947 kb on + strand, within Psyr_0455at 491.947 kb on + strand, within Psyr_0455at 491.948 kb on - strand, within Psyr_0455at 492.055 kb on + strand, within Psyr_0455at 492.177 kb on + strand, within Psyr_0455at 492.310 kb on + strand, within Psyr_0455at 492.310 kb on + strand, within Psyr_0455at 492.310 kb on + strand, within Psyr_0455at 492.320 kb on - strand, within Psyr_0455at 492.335 kb on - strand, within Psyr_0455at 492.364 kb on + strand, within Psyr_0455at 492.364 kb on + strand, within Psyr_0455at 492.364 kb on + strand, within Psyr_0455at 492.364 kb on + strand, within Psyr_0455at 492.365 kb on - strand, within Psyr_0455at 492.397 kb on + strand, within Psyr_0455at 492.397 kb on + strand, within Psyr_0455at 492.397 kb on + strand, within Psyr_0455at 492.431 kb on + strand, within Psyr_0455at 492.431 kb on + strand, within Psyr_0455at 492.431 kb on + strand, within Psyr_0455at 492.698 kb on + strand, within Psyr_0455at 492.834 kb on - strand, within Psyr_0455at 493.091 kb on - strandat 493.110 kb on + strandat 493.111 kb on - strandat 493.111 kb on - strandat 493.111 kb on - strandat 493.283 kb on + strandat 493.284 kb on - strandat 493.363 kb on + strandat 493.363 kb on + strandat 493.363 kb on + strandat 493.364 kb on - strandat 493.364 kb on - strandat 493.364 kb on - strandat 493.389 kb on - strandat 493.389 kb on - strandat 493.389 kb on - strandat 493.394 kb on + strandat 493.394 kb on + strandat 493.395 kb on - strandat 493.395 kb on - strandat 493.403 kb on + strandat 493.403 kb on + strandat 493.404 kb on - strandat 493.404 kb on - strandat 493.404 kb on - strandat 493.407 kb on + strandat 493.407 kb on + strandat 493.407 kb on + strandat 493.407 kb on + strandat 493.407 kb on + strandat 493.407 kb on + strandat 493.407 kb on + strandat 493.408 kb on - strandat 493.408 kb on - strandat 493.408 kb on - strandat 493.408 kb on - strandat 493.408 kb on - strandat 493.408 kb on - strandat 493.408 kb on - strandat 493.408 kb on - strandat 493.514 kb on - strand, within Psyr_0456at 493.514 kb on - strand, within Psyr_0456at 493.516 kb on + strand, within Psyr_0456at 493.516 kb on + strand, within Psyr_0456at 493.516 kb on + strand, within Psyr_0456at 493.516 kb on + strand, within Psyr_0456at 493.516 kb on + strand, within Psyr_0456at 493.516 kb on + strand, within Psyr_0456at 493.516 kb on + strand, within Psyr_0456at 493.517 kb on - strand, within Psyr_0456at 493.517 kb on - strand, within Psyr_0456at 493.517 kb on - strand, within Psyr_0456at 493.521 kb on + strand, within Psyr_0456at 493.522 kb on - strand, within Psyr_0456at 493.522 kb on - strand, within Psyr_0456at 493.522 kb on - strand, within Psyr_0456at 493.522 kb on - strand, within Psyr_0456at 493.522 kb on - strand, within Psyr_0456at 493.639 kb on + strand, within Psyr_0456at 493.640 kb on - strand, within Psyr_0456at 493.640 kb on - strand, within Psyr_0456at 493.640 kb on - strand, within Psyr_0456at 493.644 kb on + strand, within Psyr_0456at 493.644 kb on + strand, within Psyr_0456at 493.644 kb on + strand, within Psyr_0456at 493.644 kb on + strand, within Psyr_0456at 493.645 kb on - strand, within Psyr_0456at 493.645 kb on - strand, within Psyr_0456at 493.687 kb on + strand, within Psyr_0456at 493.687 kb on + strand, within Psyr_0456at 493.688 kb on - strand, within Psyr_0456at 493.688 kb on - strand, within Psyr_0456at 493.834 kb on + strand, within Psyr_0456at 493.835 kb on - strand, within Psyr_0456at 493.835 kb on - strand, within Psyr_0456at 493.835 kb on - strand, within Psyr_0456at 493.835 kb on - strand, within Psyr_0456at 493.926 kb on + strandat 493.926 kb on + strandat 493.927 kb on - strandat 493.927 kb on - strandat 493.938 kb on + strandat 493.938 kb on + strandat 493.939 kb on - strandat 493.939 kb on - strandat 493.965 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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490,245 + Psyr_0454 0.50 -0.7
490,245 + Psyr_0454 0.50 -0.3
490,257 + Psyr_0454 0.50 +1.3
490,257 + Psyr_0454 0.50 -0.5
490,257 + Psyr_0454 0.50 -0.7
490,258 - Psyr_0454 0.50 -1.3
490,258 - Psyr_0454 0.50 -0.7
490,258 - Psyr_0454 0.50 -1.7
490,258 - Psyr_0454 0.50 -2.2
490,258 - Psyr_0454 0.50 -1.7
490,258 - Psyr_0454 0.50 -1.0
490,402 - Psyr_0454 0.61 -0.4
490,450 - Psyr_0454 0.64 -2.2
491,010 + +0.0
491,051 - -0.4
491,077 + +0.1
491,133 + +1.0
491,134 - +1.5
491,134 - -2.2
491,142 + +0.3
491,143 - -0.7
491,199 - +0.2
491,293 + +0.5
491,294 - -0.8
491,479 + Psyr_0455 0.17 -0.5
491,480 - Psyr_0455 0.17 +1.0
491,480 - Psyr_0455 0.17 -0.0
491,497 + Psyr_0455 0.18 +0.9
491,497 + Psyr_0455 0.18 +0.4
491,497 + Psyr_0455 0.18 +0.1
491,497 + Psyr_0455 0.18 +1.2
491,497 + Psyr_0455 0.18 -1.0
491,497 + Psyr_0455 0.18 -0.2
491,497 + Psyr_0455 0.18 -0.4
491,498 - Psyr_0455 0.18 +1.2
491,498 - Psyr_0455 0.18 -0.9
491,498 - Psyr_0455 0.18 +0.6
491,498 - Psyr_0455 0.18 +0.7
491,498 - Psyr_0455 0.18 +0.2
491,498 - Psyr_0455 0.18 -1.3
491,498 - Psyr_0455 0.18 -0.4
491,498 - Psyr_0455 0.18 +0.7
491,557 + Psyr_0455 0.21 -0.5
491,558 - Psyr_0455 0.21 +0.2
491,558 - Psyr_0455 0.21 +0.8
491,756 - Psyr_0455 0.32 -0.4
491,780 - Psyr_0455 0.33 -0.2
491,947 + Psyr_0455 0.42 -0.1
491,947 + Psyr_0455 0.42 +0.4
491,947 + Psyr_0455 0.42 +0.5
491,947 + Psyr_0455 0.42 -1.1
491,947 + Psyr_0455 0.42 -0.4
491,948 - Psyr_0455 0.42 -0.7
492,055 + Psyr_0455 0.48 +0.2
492,177 + Psyr_0455 0.54 +1.3
492,310 + Psyr_0455 0.61 +0.8
492,310 + Psyr_0455 0.61 -0.1
492,310 + Psyr_0455 0.61 -0.3
492,320 - Psyr_0455 0.62 +0.5
492,335 - Psyr_0455 0.62 -0.1
492,364 + Psyr_0455 0.64 +2.0
492,364 + Psyr_0455 0.64 +0.7
492,364 + Psyr_0455 0.64 +0.2
492,364 + Psyr_0455 0.64 -2.8
492,365 - Psyr_0455 0.64 -0.3
492,397 + Psyr_0455 0.66 +0.6
492,397 + Psyr_0455 0.66 +0.2
492,397 + Psyr_0455 0.66 -1.5
492,431 + Psyr_0455 0.68 +1.5
492,431 + Psyr_0455 0.68 +0.6
492,431 + Psyr_0455 0.68 +0.4
492,698 + Psyr_0455 0.82 +0.3
492,834 - Psyr_0455 0.89 +0.6
493,091 - -0.8
493,110 + +1.2
493,111 - +2.0
493,111 - +0.5
493,111 - -0.4
493,283 + +0.7
493,284 - -1.2
493,363 + +0.3
493,363 + -1.0
493,363 + -1.7
493,364 - +0.4
493,364 - +0.4
493,364 - +1.9
493,389 - +0.5
493,389 - -0.3
493,389 - +0.0
493,394 + -0.7
493,394 + +0.1
493,395 - +0.2
493,395 - -1.9
493,403 + +1.8
493,403 + +0.6
493,404 - -0.5
493,404 - +0.1
493,404 - +0.3
493,407 + +0.2
493,407 + -0.4
493,407 + +0.3
493,407 + -2.2
493,407 + -0.3
493,407 + +0.9
493,407 + -0.3
493,408 - -2.3
493,408 - -0.4
493,408 - -0.3
493,408 - +1.5
493,408 - +0.0
493,408 - -0.6
493,408 - +0.5
493,408 - -0.2
493,514 - Psyr_0456 0.21 +0.0
493,514 - Psyr_0456 0.21 +0.7
493,516 + Psyr_0456 0.22 -1.2
493,516 + Psyr_0456 0.22 +0.4
493,516 + Psyr_0456 0.22 +0.3
493,516 + Psyr_0456 0.22 -0.0
493,516 + Psyr_0456 0.22 +0.4
493,516 + Psyr_0456 0.22 +1.3
493,516 + Psyr_0456 0.22 -0.4
493,517 - Psyr_0456 0.22 +0.2
493,517 - Psyr_0456 0.22 -0.6
493,517 - Psyr_0456 0.22 -0.8
493,521 + Psyr_0456 0.23 +0.3
493,522 - Psyr_0456 0.23 -0.3
493,522 - Psyr_0456 0.23 -0.5
493,522 - Psyr_0456 0.23 +0.0
493,522 - Psyr_0456 0.23 -0.3
493,522 - Psyr_0456 0.23 +0.4
493,639 + Psyr_0456 0.44 +0.5
493,640 - Psyr_0456 0.44 +1.6
493,640 - Psyr_0456 0.44 -0.0
493,640 - Psyr_0456 0.44 -0.4
493,644 + Psyr_0456 0.45 -0.6
493,644 + Psyr_0456 0.45 +0.7
493,644 + Psyr_0456 0.45 +0.8
493,644 + Psyr_0456 0.45 -1.6
493,645 - Psyr_0456 0.45 -0.7
493,645 - Psyr_0456 0.45 +1.3
493,687 + Psyr_0456 0.53 -0.4
493,687 + Psyr_0456 0.53 +0.1
493,688 - Psyr_0456 0.53 -2.0
493,688 - Psyr_0456 0.53 +0.4
493,834 + Psyr_0456 0.80 -0.0
493,835 - Psyr_0456 0.80 -1.2
493,835 - Psyr_0456 0.80 +0.2
493,835 - Psyr_0456 0.80 -0.6
493,835 - Psyr_0456 0.80 +0.3
493,926 + -0.7
493,926 + +0.4
493,927 - +0.3
493,927 - -0.3
493,938 + +0.8
493,938 + -1.0
493,939 - -0.6
493,939 - +0.4
493,965 + -0.6

Or see this region's nucleotide sequence