Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002115

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,369,335	+		ABIE53_002114	0.51	-1.5
2,369,639	+		ABIE53_002114	0.74	-0.9
2,369,639	+		ABIE53_002114	0.74	-1.7
2,369,640	-		ABIE53_002114	0.74	-1.3
2,369,664	+		ABIE53_002114	0.76	+0.7
2,369,664	+		ABIE53_002114	0.76	-1.9
2,369,664	+		ABIE53_002114	0.76	-2.6
2,369,665	-		ABIE53_002114	0.76	-0.7
2,369,688	+		ABIE53_002114	0.78	-2.5
2,369,688	+		ABIE53_002114	0.78	-3.2
2,369,688	+		ABIE53_002114	0.78	-1.0
2,369,689	-		ABIE53_002114	0.78	-2.2
2,369,689	-		ABIE53_002114	0.78	+0.5
2,369,815	+		ABIE53_002114	0.87	+0.1
2,369,816	-		ABIE53_002114	0.87	-0.7
2,369,845	+		ABIE53_002114	0.89	+2.1
2,369,845	+		ABIE53_002114	0.89	-1.9
2,369,845	+		ABIE53_002114	0.89	-2.4
2,369,845	+		ABIE53_002114	0.89	-0.2
2,369,848	+		ABIE53_002114	0.90	+1.1
2,369,884	+				-1.1
2,369,884	+				-2.1
2,369,884	+				-1.2
2,369,884	+				-0.3
2,369,884	+				-0.3
2,369,884	+				-0.5
2,369,884	+				-2.4
2,369,884	+				-2.0
2,369,885	-				-2.6
2,369,986	+				-1.8
2,369,986	+				+1.1
2,369,986	+				+0.3
2,369,986	+				+0.1
2,369,986	+				-0.5
2,369,987	-				-0.7
2,370,059	+				+0.1
2,370,059	+				+0.1
2,370,060	-				+0.1
2,370,117	+				-0.9
2,370,117	+				-0.3
2,370,117	+				+2.1
2,370,117	+				-0.7
2,370,117	+				+0.3
2,370,117	+				-1.1
2,370,117	+				-2.6
2,370,117	+				-1.7
2,370,117	+				-1.4
2,370,117	+				-1.1
2,370,118	-				-2.1
2,370,127	+				+0.3
2,370,127	+				-0.8
2,370,127	+				-1.6
2,370,127	+				-1.6
2,370,131	+				+0.5
2,370,131	+				+1.1
2,370,131	+				-0.3
2,370,131	+				+1.1
2,370,132	-				-0.5
2,370,132	-				-0.3
2,370,136	+				-0.5
2,370,136	+				+1.8
2,370,280	+		ABIE53_002115	0.18	+0.5
2,370,280	+		ABIE53_002115	0.18	-2.3
2,370,289	+		ABIE53_002115	0.20	-2.5
2,370,289	+		ABIE53_002115	0.20	-2.0
2,370,289	+		ABIE53_002115	0.20	-1.6
2,370,289	+		ABIE53_002115	0.20	-3.4
2,370,289	+		ABIE53_002115	0.20	-1.6
2,370,289	+		ABIE53_002115	0.20	+2.1
2,370,289	+		ABIE53_002115	0.20	-1.6
2,370,290	-		ABIE53_002115	0.20	+1.1
2,370,409	+		ABIE53_002115	0.38	-2.5
2,370,409	+		ABIE53_002115	0.38	-2.9
2,370,409	+		ABIE53_002115	0.38	+0.5
2,370,409	+		ABIE53_002115	0.38	-2.5
2,370,409	+		ABIE53_002115	0.38	-1.1
2,370,409	+		ABIE53_002115	0.38	-1.2
2,370,409	+		ABIE53_002115	0.38	-0.7
2,370,409	+		ABIE53_002115	0.38	+1.7
2,370,409	+		ABIE53_002115	0.38	-0.2
2,370,410	-		ABIE53_002115	0.38	-1.2
2,370,410	-		ABIE53_002115	0.38	-1.4
2,370,410	-		ABIE53_002115	0.38	-1.1
2,370,410	-		ABIE53_002115	0.38	-3.0
2,370,410	-		ABIE53_002115	0.38	-3.7
2,370,410	-		ABIE53_002115	0.38	-1.5
2,370,415	+		ABIE53_002115	0.39	+0.1
2,370,415	+		ABIE53_002115	0.39	-3.0
2,370,415	+		ABIE53_002115	0.39	+0.5
2,370,415	+		ABIE53_002115	0.39	-0.5
2,370,415	+		ABIE53_002115	0.39	-1.5
2,370,415	+		ABIE53_002115	0.39	+0.1
2,370,415	+		ABIE53_002115	0.39	-0.9
2,370,415	+		ABIE53_002115	0.39	-1.3
2,370,415	+		ABIE53_002115	0.39	-0.3
2,370,415	+		ABIE53_002115	0.39	+0.1
2,370,415	+		ABIE53_002115	0.39	+0.3
2,370,415	+		ABIE53_002115	0.39	-2.2
2,370,415	+		ABIE53_002115	0.39	-3.3
2,370,415	+		ABIE53_002115	0.39	-1.7
2,370,416	-		ABIE53_002115	0.39	-1.8
2,370,416	-		ABIE53_002115	0.39	+0.1
2,370,416	-		ABIE53_002115	0.39	-0.5
2,370,460	+		ABIE53_002115	0.46	-1.1
2,370,460	+		ABIE53_002115	0.46	-0.9
2,370,461	-		ABIE53_002115	0.46	-0.9
2,370,461	-		ABIE53_002115	0.46	-1.9
2,370,661	+		ABIE53_002115	0.77	+3.1
2,370,720	+		ABIE53_002115	0.86	+0.1
2,370,720	+		ABIE53_002115	0.86	-1.7
2,370,721	-		ABIE53_002115	0.86	-0.7
2,370,721	-		ABIE53_002115	0.86	-2.5
2,370,775	+				-0.7
2,370,775	+				-0.9
2,370,794	+				-0.9
2,370,794	+				-0.5
2,370,870	+				-1.7
2,370,870	+				+0.1
2,370,958	+				-0.5
2,370,958	+				-0.3
2,370,958	+				-0.1
2,370,959	-				-0.5
2,370,965	+				-0.0
2,370,965	+				+0.4
2,370,965	+				-0.9
2,370,965	+				+0.1
2,370,965	+				-1.3
2,370,965	+				+0.5
2,370,965	+				+0.5
2,370,965	+				-0.6
2,370,965	+				-2.2
2,370,993	+				-1.5
2,370,993	+				-2.5
2,370,993	+				-0.9
2,370,993	+				-0.7
2,370,993	+				-3.4
2,370,994	-				-0.9
2,371,014	+				+1.1
2,371,033	+				+0.5
2,371,033	+				-1.3
2,371,033	+				-1.9
2,371,034	-				-0.3
2,371,034	-				+0.1
2,371,034	-				-0.5
2,371,113	+				-1.7
2,371,113	+				-2.0
2,371,113	+				-1.6
2,371,228	+		ABIE53_002116	0.18	-1.5
2,371,229	-		ABIE53_002116	0.18	-0.7
2,371,229	-		ABIE53_002116	0.18	-1.9
2,371,276	+		ABIE53_002116	0.22	-0.5
2,371,456	+		ABIE53_002116	0.36	-0.9
2,371,510	+		ABIE53_002116	0.41	-0.5
2,371,511	-		ABIE53_002116	0.41	-1.1
2,371,543	+		ABIE53_002116	0.43	-0.3
2,371,543	+		ABIE53_002116	0.43	-1.5
2,371,543	+		ABIE53_002116	0.43	-1.3
2,371,543	+		ABIE53_002116	0.43	-0.9
2,371,543	+		ABIE53_002116	0.43	+1.1
2,371,544	-		ABIE53_002116	0.43	-1.1
2,371,716	+		ABIE53_002116	0.57	+0.7