Experiment: nitrite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0065 and Psest_0066 are separated by 276 nucleotides Psest_0066 and Psest_0067 are separated by 8 nucleotides
Psest_0065: Psest_0065 - Subtilisin-like serine proteases, at 65,325 to 66,716
_0065
Psest_0066: Psest_0066 - Protein of unknown function (DUF3060)., at 66,993 to 67,493
_0066
Psest_0067: Psest_0067 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 67,502 to 68,500
_0067
Position (kb) 66
67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 65.994 kb on + strand, within Psest_0065 at 66.162 kb on + strand, within Psest_0065 at 66.162 kb on + strand, within Psest_0065 at 66.162 kb on + strand, within Psest_0065 at 66.162 kb on + strand, within Psest_0065 at 66.162 kb on + strand, within Psest_0065 at 66.163 kb on - strand, within Psest_0065 at 66.163 kb on - strand, within Psest_0065 at 66.250 kb on - strand, within Psest_0065 at 66.250 kb on - strand, within Psest_0065 at 66.351 kb on + strand, within Psest_0065 at 66.351 kb on + strand, within Psest_0065 at 66.351 kb on + strand, within Psest_0065 at 66.352 kb on - strand, within Psest_0065 at 66.352 kb on - strand, within Psest_0065 at 66.352 kb on - strand, within Psest_0065 at 66.420 kb on + strand, within Psest_0065 at 66.421 kb on - strand, within Psest_0065 at 66.421 kb on - strand, within Psest_0065 at 66.507 kb on + strand, within Psest_0065 at 66.507 kb on + strand, within Psest_0065 at 66.507 kb on + strand, within Psest_0065 at 66.507 kb on + strand, within Psest_0065 at 66.508 kb on - strand, within Psest_0065 at 66.508 kb on - strand, within Psest_0065 at 66.508 kb on - strand, within Psest_0065 at 66.561 kb on + strand, within Psest_0065 at 66.562 kb on - strand, within Psest_0065 at 66.572 kb on - strand, within Psest_0065 at 66.652 kb on + strand at 66.719 kb on + strand at 66.719 kb on + strand at 66.719 kb on + strand at 66.719 kb on + strand at 66.720 kb on - strand at 66.720 kb on - strand at 66.723 kb on + strand at 66.724 kb on - strand at 66.856 kb on + strand at 66.856 kb on + strand at 66.856 kb on + strand at 66.856 kb on + strand at 66.856 kb on + strand at 66.856 kb on + strand at 66.856 kb on + strand at 66.857 kb on - strand at 66.857 kb on - strand at 67.421 kb on + strand, within Psest_0066 at 67.421 kb on + strand, within Psest_0066 at 67.421 kb on + strand at 67.422 kb on - strand, within Psest_0066 at 67.422 kb on - strand, within Psest_0066 at 67.699 kb on - strand, within Psest_0067 at 67.835 kb on + strand, within Psest_0067 at 67.917 kb on + strand, within Psest_0067
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 2.5 mM remove 65,994 + Psest_0065 0.48 -1.4 66,162 + Psest_0065 0.60 -0.4 66,162 + Psest_0065 0.60 -0.6 66,162 + Psest_0065 0.60 -0.1 66,162 + Psest_0065 0.60 -2.0 66,162 + Psest_0065 0.60 +0.7 66,163 - Psest_0065 0.60 -0.6 66,163 - Psest_0065 0.60 +0.3 66,250 - Psest_0065 0.66 -0.4 66,250 - Psest_0065 0.66 +0.9 66,351 + Psest_0065 0.74 -0.5 66,351 + Psest_0065 0.74 -0.6 66,351 + Psest_0065 0.74 -0.3 66,352 - Psest_0065 0.74 +2.4 66,352 - Psest_0065 0.74 -0.1 66,352 - Psest_0065 0.74 -0.3 66,420 + Psest_0065 0.79 +2.0 66,421 - Psest_0065 0.79 -0.1 66,421 - Psest_0065 0.79 +1.2 66,507 + Psest_0065 0.85 -1.0 66,507 + Psest_0065 0.85 -0.5 66,507 + Psest_0065 0.85 +0.8 66,507 + Psest_0065 0.85 -0.9 66,508 - Psest_0065 0.85 -1.1 66,508 - Psest_0065 0.85 -2.7 66,508 - Psest_0065 0.85 +1.2 66,561 + Psest_0065 0.89 -1.4 66,562 - Psest_0065 0.89 -1.0 66,572 - Psest_0065 0.90 -0.1 66,652 + +0.2 66,719 + +1.0 66,719 + +0.7 66,719 + +0.9 66,719 + +0.9 66,720 - +0.4 66,720 - -0.4 66,723 + -0.4 66,724 - -2.0 66,856 + -0.8 66,856 + +1.2 66,856 + -1.5 66,856 + +0.0 66,856 + -0.1 66,856 + -1.5 66,856 + -0.7 66,857 - +0.5 66,857 - -0.8 67,421 + Psest_0066 0.85 +2.2 67,421 + Psest_0066 0.85 +1.0 67,421 + +0.7 67,422 - Psest_0066 0.86 -3.7 67,422 - Psest_0066 0.86 +1.7 67,699 - Psest_0067 0.20 +1.2 67,835 + Psest_0067 0.33 +1.6 67,917 + Psest_0067 0.42 +0.9
Or see this region's nucleotide sequence