Experiment: nitrite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0061 and Psest_0062 are separated by 175 nucleotides Psest_0062 and Psest_0063 overlap by 4 nucleotides Psest_0063 and Psest_0064 are separated by 171 nucleotides
Psest_0061: Psest_0061 - hypothetical protein, at 61,457 to 61,786
_0061
Psest_0062: Psest_0062 - tryptophan synthase, alpha subunit, at 61,962 to 62,771
_0062
Psest_0063: Psest_0063 - tryptophan synthase, beta subunit, at 62,768 to 63,979
_0063
Psest_0064: Psest_0064 - Transcriptional regulator, at 64,151 to 65,053
_0064
Position (kb) 62
63
64 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 61.896 kb on + strand at 61.897 kb on - strand at 61.900 kb on + strand at 61.900 kb on + strand at 61.900 kb on + strand at 61.901 kb on - strand at 61.901 kb on - strand at 61.901 kb on - strand at 61.901 kb on - strand at 61.901 kb on - strand at 61.980 kb on + strand at 61.980 kb on + strand at 61.981 kb on - strand at 62.245 kb on + strand, within Psest_0062 at 62.245 kb on + strand, within Psest_0062 at 62.245 kb on + strand, within Psest_0062 at 62.245 kb on + strand, within Psest_0062 at 62.246 kb on - strand, within Psest_0062 at 62.246 kb on - strand, within Psest_0062 at 62.246 kb on - strand, within Psest_0062 at 62.246 kb on - strand, within Psest_0062 at 62.246 kb on - strand, within Psest_0062 at 62.248 kb on + strand, within Psest_0062 at 62.249 kb on - strand, within Psest_0062 at 62.249 kb on - strand, within Psest_0062 at 62.249 kb on - strand, within Psest_0062 at 62.464 kb on + strand, within Psest_0062 at 62.464 kb on + strand, within Psest_0062 at 62.464 kb on + strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.684 kb on - strand, within Psest_0062 at 62.992 kb on - strand, within Psest_0063 at 62.992 kb on - strand, within Psest_0063 at 63.405 kb on + strand, within Psest_0063 at 63.405 kb on + strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.564 kb on + strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.742 kb on - strand, within Psest_0063 at 63.742 kb on - strand, within Psest_0063 at 63.742 kb on - strand, within Psest_0063 at 63.742 kb on - strand, within Psest_0063 at 63.787 kb on - strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.811 kb on - strand, within Psest_0063 at 63.811 kb on - strand, within Psest_0063 at 63.826 kb on - strand, within Psest_0063 at 63.826 kb on - strand, within Psest_0063 at 64.086 kb on + strand at 64.150 kb on + strand at 64.150 kb on + strand at 64.209 kb on + strand at 64.210 kb on - strand at 64.210 kb on - strand at 64.210 kb on - strand at 64.829 kb on + strand, within Psest_0064 at 64.829 kb on + strand, within Psest_0064 at 64.829 kb on + strand, within Psest_0064 at 64.829 kb on + strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 2.5 mM remove 61,896 + -0.6 61,897 - +0.1 61,900 + -0.0 61,900 + +2.0 61,900 + -0.3 61,901 - +0.7 61,901 - -0.3 61,901 - +1.6 61,901 - -0.4 61,901 - -1.5 61,980 + -1.8 61,980 + -0.0 61,981 - -0.0 62,245 + Psest_0062 0.35 -3.6 62,245 + Psest_0062 0.35 -4.1 62,245 + Psest_0062 0.35 -3.6 62,245 + Psest_0062 0.35 -4.1 62,246 - Psest_0062 0.35 -1.9 62,246 - Psest_0062 0.35 -2.5 62,246 - Psest_0062 0.35 +0.1 62,246 - Psest_0062 0.35 -2.0 62,246 - Psest_0062 0.35 -2.4 62,248 + Psest_0062 0.35 -4.9 62,249 - Psest_0062 0.35 -2.6 62,249 - Psest_0062 0.35 -1.8 62,249 - Psest_0062 0.35 -2.7 62,464 + Psest_0062 0.62 -5.5 62,464 + Psest_0062 0.62 -3.3 62,464 + Psest_0062 0.62 -6.2 62,465 - Psest_0062 0.62 -2.4 62,465 - Psest_0062 0.62 -3.1 62,465 - Psest_0062 0.62 -4.7 62,465 - Psest_0062 0.62 -4.4 62,465 - Psest_0062 0.62 -2.1 62,465 - Psest_0062 0.62 +0.1 62,465 - Psest_0062 0.62 -0.3 62,465 - Psest_0062 0.62 -2.1 62,465 - Psest_0062 0.62 -3.7 62,465 - Psest_0062 0.62 -1.5 62,465 - Psest_0062 0.62 -3.5 62,465 - Psest_0062 0.62 -1.1 62,684 - Psest_0062 0.89 -4.8 62,992 - Psest_0063 0.18 -2.8 62,992 - Psest_0063 0.18 -4.0 63,405 + Psest_0063 0.53 -1.1 63,405 + Psest_0063 0.53 -2.6 63,406 - Psest_0063 0.53 -2.9 63,406 - Psest_0063 0.53 -3.2 63,406 - Psest_0063 0.53 -4.4 63,406 - Psest_0063 0.53 -3.1 63,406 - Psest_0063 0.53 -0.9 63,406 - Psest_0063 0.53 -0.6 63,406 - Psest_0063 0.53 +0.1 63,406 - Psest_0063 0.53 -2.8 63,564 + Psest_0063 0.66 -4.6 63,565 - Psest_0063 0.66 -3.2 63,565 - Psest_0063 0.66 -4.4 63,565 - Psest_0063 0.66 -2.2 63,565 - Psest_0063 0.66 -2.0 63,565 - Psest_0063 0.66 -3.7 63,741 + Psest_0063 0.80 -4.9 63,741 + Psest_0063 0.80 -2.6 63,741 + Psest_0063 0.80 -0.9 63,741 + Psest_0063 0.80 -2.2 63,741 + Psest_0063 0.80 -3.6 63,742 - Psest_0063 0.80 -5.1 63,742 - Psest_0063 0.80 -3.3 63,742 - Psest_0063 0.80 -0.9 63,742 - Psest_0063 0.80 -0.7 63,787 - Psest_0063 0.84 -2.5 63,810 + Psest_0063 0.86 -1.3 63,810 + Psest_0063 0.86 -0.9 63,810 + Psest_0063 0.86 -4.9 63,810 + Psest_0063 0.86 -5.9 63,810 + Psest_0063 0.86 -2.6 63,810 + Psest_0063 0.86 -1.9 63,810 + Psest_0063 0.86 -3.3 63,810 + Psest_0063 0.86 -4.4 63,811 - Psest_0063 0.86 -1.1 63,811 - Psest_0063 0.86 -2.1 63,826 - Psest_0063 0.87 -4.2 63,826 - Psest_0063 0.87 -3.9 64,086 + -0.0 64,150 + +0.8 64,150 + +0.8 64,209 + +0.5 64,210 - +2.0 64,210 - +0.2 64,210 - -0.4 64,829 + Psest_0064 0.75 +2.5 64,829 + Psest_0064 0.75 +1.0 64,829 + Psest_0064 0.75 +1.4 64,829 + Psest_0064 0.75 +1.3 64,830 - Psest_0064 0.75 +2.3 64,830 - Psest_0064 0.75 -0.9 64,830 - Psest_0064 0.75 -1.3 64,830 - Psest_0064 0.75 +0.8 64,830 - Psest_0064 0.75 -0.1
Or see this region's nucleotide sequence