Experiment: nitrite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0419 and Psest_0422 are separated by 948 nucleotides Psest_0422 and Psest_0423 overlap by 8 nucleotides
Psest_0419: Psest_0419 - Acyl-CoA dehydrogenase (EC 1.3.8.7) <small>(from data)</small>, at 455,210 to 456,988
_0419
Psest_0422: Psest_0422 - Site-specific recombinase XerD, at 457,937 to 459,058
_0422
Psest_0423: Psest_0423 - hypothetical protein, at 459,051 to 461,111
_0423
Position (kb) 457
458
459
460 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 456.962 kb on + strand at 456.963 kb on - strand at 456.963 kb on - strand at 456.963 kb on - strand at 457.015 kb on - strand at 457.047 kb on - strand at 457.047 kb on - strand at 457.081 kb on + strand at 457.081 kb on + strand at 457.081 kb on + strand at 457.081 kb on + strand at 457.081 kb on + strand at 457.081 kb on + strand at 457.081 kb on + strand at 457.082 kb on - strand at 457.082 kb on - strand at 457.082 kb on - strand at 457.093 kb on + strand at 457.094 kb on - strand at 457.094 kb on - strand at 457.094 kb on - strand at 457.094 kb on - strand at 457.094 kb on - strand at 457.122 kb on + strand at 457.123 kb on - strand at 457.134 kb on + strand at 457.135 kb on - strand at 457.150 kb on + strand at 457.160 kb on + strand at 457.161 kb on - strand at 457.184 kb on - strand at 457.184 kb on - strand at 457.184 kb on - strand at 457.188 kb on + strand at 457.188 kb on + strand at 457.188 kb on + strand at 457.188 kb on + strand at 457.188 kb on + strand at 457.189 kb on - strand at 457.189 kb on - strand at 457.189 kb on - strand at 457.189 kb on - strand at 457.189 kb on - strand at 457.189 kb on - strand at 457.189 kb on - strand at 457.196 kb on - strand at 457.196 kb on - strand at 457.196 kb on - strand at 457.467 kb on + strand at 457.468 kb on - strand at 457.468 kb on - strand at 457.468 kb on - strand at 457.491 kb on + strand at 457.491 kb on + strand at 457.491 kb on + strand at 457.491 kb on + strand at 457.491 kb on + strand at 457.492 kb on - strand at 457.492 kb on - strand at 457.492 kb on - strand at 457.494 kb on + strand at 457.495 kb on - strand at 457.495 kb on - strand at 457.495 kb on - strand at 457.495 kb on - strand at 457.495 kb on - strand at 457.495 kb on - strand at 457.515 kb on - strand at 457.614 kb on + strand at 457.614 kb on + strand at 457.615 kb on - strand at 457.615 kb on - strand at 457.615 kb on - strand at 457.615 kb on - strand at 457.672 kb on - strand at 457.691 kb on - strand at 457.694 kb on + strand at 457.694 kb on + strand at 457.695 kb on - strand at 457.695 kb on - strand at 457.698 kb on + strand at 457.699 kb on - strand at 457.721 kb on - strand at 457.721 kb on - strand at 457.721 kb on - strand at 457.721 kb on - strand at 457.728 kb on - strand at 457.728 kb on - strand at 457.791 kb on + strand at 457.791 kb on + strand at 457.796 kb on - strand at 457.903 kb on + strand at 457.934 kb on + strand at 457.935 kb on - strand at 458.042 kb on - strand at 458.116 kb on + strand, within Psest_0422 at 458.116 kb on + strand, within Psest_0422 at 458.164 kb on - strand, within Psest_0422 at 458.192 kb on + strand, within Psest_0422 at 458.196 kb on + strand, within Psest_0422 at 458.253 kb on + strand, within Psest_0422 at 458.254 kb on - strand, within Psest_0422 at 458.310 kb on + strand, within Psest_0422 at 458.490 kb on + strand, within Psest_0422 at 458.503 kb on + strand, within Psest_0422 at 458.798 kb on - strand, within Psest_0422 at 458.798 kb on - strand, within Psest_0422 at 458.872 kb on + strand, within Psest_0422 at 458.872 kb on + strand, within Psest_0422 at 458.876 kb on + strand, within Psest_0422 at 458.891 kb on + strand, within Psest_0422 at 459.005 kb on + strand at 459.006 kb on - strand at 459.007 kb on + strand at 459.007 kb on + strand at 459.008 kb on - strand at 459.157 kb on - strand at 459.232 kb on - strand at 459.232 kb on - strand at 459.245 kb on + strand at 459.462 kb on + strand, within Psest_0423 at 459.630 kb on - strand, within Psest_0423 at 459.643 kb on + strand, within Psest_0423 at 459.644 kb on - strand, within Psest_0423 at 459.716 kb on + strand, within Psest_0423 at 459.749 kb on + strand, within Psest_0423 at 459.749 kb on + strand, within Psest_0423 at 459.750 kb on - strand, within Psest_0423 at 459.897 kb on + strand, within Psest_0423 at 459.918 kb on - strand, within Psest_0423 at 459.979 kb on + strand, within Psest_0423 at 459.979 kb on + strand, within Psest_0423 at 459.980 kb on - strand, within Psest_0423
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 2.5 mM remove 456,962 + -0.4 456,963 - -0.8 456,963 - +0.1 456,963 - +0.1 457,015 - -2.8 457,047 - +1.2 457,047 - -0.7 457,081 + +0.4 457,081 + +1.1 457,081 + -0.5 457,081 + +0.0 457,081 + -0.8 457,081 + -2.8 457,081 + -1.0 457,082 - +0.9 457,082 - +0.1 457,082 - -0.1 457,093 + -1.4 457,094 - +0.6 457,094 - +1.1 457,094 - +1.3 457,094 - +0.4 457,094 - +2.2 457,122 + -0.7 457,123 - +2.0 457,134 + +0.8 457,135 - +0.3 457,150 + -1.8 457,160 + -0.1 457,161 - +0.8 457,184 - +0.9 457,184 - +1.4 457,184 - -0.3 457,188 + -1.2 457,188 + -1.1 457,188 + +0.1 457,188 + +1.1 457,188 + -1.4 457,189 - +1.3 457,189 - +0.9 457,189 - +0.8 457,189 - -0.0 457,189 - +0.5 457,189 - -0.4 457,189 - +0.3 457,196 - +1.9 457,196 - +0.1 457,196 - -0.6 457,467 + +0.0 457,468 - -0.0 457,468 - +1.2 457,468 - -0.6 457,491 + -0.7 457,491 + -0.2 457,491 + -0.6 457,491 + +1.8 457,491 + +0.5 457,492 - +0.4 457,492 - +1.6 457,492 - +0.3 457,494 + -0.5 457,495 - -0.8 457,495 - +0.2 457,495 - +1.3 457,495 - +1.6 457,495 - +0.9 457,495 - -0.1 457,515 - +0.4 457,614 + +1.6 457,614 + -1.2 457,615 - -0.2 457,615 - +0.9 457,615 - -0.6 457,615 - -1.1 457,672 - -0.9 457,691 - -2.1 457,694 + +3.0 457,694 + +1.5 457,695 - -0.4 457,695 - +0.1 457,698 + -1.6 457,699 - +1.4 457,721 - +0.2 457,721 - +1.3 457,721 - -1.0 457,721 - +1.2 457,728 - +3.0 457,728 - -1.1 457,791 + +0.6 457,791 + +1.8 457,796 - +1.4 457,903 + -0.5 457,934 + +0.6 457,935 - +0.3 458,042 - -1.0 458,116 + Psest_0422 0.16 -1.2 458,116 + Psest_0422 0.16 -2.5 458,164 - Psest_0422 0.20 -1.1 458,192 + Psest_0422 0.23 +0.2 458,196 + Psest_0422 0.23 -0.4 458,253 + Psest_0422 0.28 -0.3 458,254 - Psest_0422 0.28 -1.8 458,310 + Psest_0422 0.33 -1.7 458,490 + Psest_0422 0.49 +1.2 458,503 + Psest_0422 0.50 +1.9 458,798 - Psest_0422 0.77 +1.2 458,798 - Psest_0422 0.77 -1.7 458,872 + Psest_0422 0.83 -1.2 458,872 + Psest_0422 0.83 -0.9 458,876 + Psest_0422 0.84 +0.0 458,891 + Psest_0422 0.85 +0.2 459,005 + -0.7 459,006 - +0.2 459,007 + +1.0 459,007 + +0.9 459,008 - -0.9 459,157 - -0.8 459,232 - +0.3 459,232 - +1.0 459,245 + -0.4 459,462 + Psest_0423 0.20 +0.6 459,630 - Psest_0423 0.28 +2.4 459,643 + Psest_0423 0.29 +0.0 459,644 - Psest_0423 0.29 -1.7 459,716 + Psest_0423 0.32 +0.0 459,749 + Psest_0423 0.34 -2.8 459,749 + Psest_0423 0.34 -0.4 459,750 - Psest_0423 0.34 -0.3 459,897 + Psest_0423 0.41 +0.3 459,918 - Psest_0423 0.42 +0.0 459,979 + Psest_0423 0.45 +0.2 459,979 + Psest_0423 0.45 -0.7 459,980 - Psest_0423 0.45 -0.7
Or see this region's nucleotide sequence