Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0125

Experiment: nitrite 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0124 and Psest_0125 are separated by 1 nucleotidesPsest_0125 and Psest_0126 are separated by 11 nucleotides Psest_0124: Psest_0124 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 120,517 to 122,034 _0124 Psest_0125: Psest_0125 - type VI secretion ATPase, ClpV1 family, at 122,036 to 124,627 _0125 Psest_0126: Psest_0126 - type VI secretion protein, VC_A0111 family, at 124,639 to 125,646 _0126 Psest_0127: Psest_0127 - type VI secretion protein, VC_A0110 family, at 125,610 to 127,400 _0127 Position (kb) 122 123 124 125Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 121.276 kb on + strand, within Psest_0124at 121.276 kb on + strand, within Psest_0124at 121.407 kb on - strand, within Psest_0124at 121.755 kb on - strand, within Psest_0124at 121.874 kb on + strand, within Psest_0124at 121.875 kb on - strand, within Psest_0124at 121.875 kb on - strand, within Psest_0124at 121.875 kb on - strand, within Psest_0124at 121.900 kb on + strandat 121.900 kb on + strandat 121.900 kb on + strandat 122.331 kb on + strand, within Psest_0125at 122.331 kb on + strand, within Psest_0125at 122.332 kb on - strand, within Psest_0125at 122.332 kb on - strand, within Psest_0125at 122.334 kb on + strand, within Psest_0125at 122.335 kb on - strand, within Psest_0125at 122.556 kb on + strand, within Psest_0125at 122.556 kb on + strand, within Psest_0125at 122.557 kb on - strand, within Psest_0125at 122.557 kb on - strand, within Psest_0125at 122.557 kb on - strand, within Psest_0125at 122.616 kb on + strand, within Psest_0125at 122.728 kb on + strand, within Psest_0125at 122.728 kb on + strand, within Psest_0125at 122.728 kb on + strandat 122.728 kb on + strand, within Psest_0125at 122.728 kb on + strand, within Psest_0125at 122.729 kb on - strand, within Psest_0125at 122.729 kb on - strand, within Psest_0125at 123.470 kb on + strand, within Psest_0125at 123.470 kb on + strand, within Psest_0125at 123.470 kb on + strand, within Psest_0125at 123.470 kb on + strand, within Psest_0125at 123.471 kb on - strand, within Psest_0125at 123.471 kb on - strand, within Psest_0125at 123.471 kb on - strand, within Psest_0125at 123.471 kb on - strand, within Psest_0125at 123.471 kb on - strand, within Psest_0125at 123.474 kb on + strand, within Psest_0125at 123.485 kb on + strand, within Psest_0125at 123.522 kb on + strand, within Psest_0125at 123.522 kb on + strand, within Psest_0125at 123.522 kb on + strand, within Psest_0125at 123.522 kb on + strand, within Psest_0125at 123.522 kb on + strand, within Psest_0125at 123.523 kb on - strand, within Psest_0125at 123.523 kb on - strand, within Psest_0125at 123.523 kb on - strand, within Psest_0125at 123.544 kb on - strand, within Psest_0125at 123.648 kb on + strand, within Psest_0125at 123.648 kb on + strand, within Psest_0125at 123.657 kb on + strand, within Psest_0125at 123.657 kb on + strand, within Psest_0125at 123.657 kb on + strand, within Psest_0125at 123.658 kb on - strand, within Psest_0125at 123.658 kb on - strand, within Psest_0125at 124.254 kb on + strand, within Psest_0125at 124.254 kb on + strand, within Psest_0125at 124.598 kb on + strandat 124.599 kb on - strandat 125.048 kb on + strand, within Psest_0126at 125.048 kb on + strand, within Psest_0126at 125.048 kb on + strand, within Psest_0126at 125.048 kb on + strand, within Psest_0126at 125.049 kb on - strand, within Psest_0126at 125.049 kb on - strand, within Psest_0126at 125.049 kb on - strand, within Psest_0126at 125.049 kb on - strand, within Psest_0126at 125.052 kb on - strand, within Psest_0126at 125.111 kb on + strand, within Psest_0126at 125.112 kb on - strand, within Psest_0126at 125.240 kb on + strand, within Psest_0126at 125.348 kb on + strand, within Psest_0126at 125.348 kb on + strand, within Psest_0126at 125.348 kb on + strand, within Psest_0126at 125.349 kb on - strand, within Psest_0126at 125.349 kb on - strand, within Psest_0126at 125.349 kb on - strand, within Psest_0126at 125.349 kb on - strand, within Psest_0126at 125.349 kb on - strand, within Psest_0126at 125.582 kb on + strandat 125.583 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 2.5 mM
remove
121,276 + Psest_0124 0.50 -2.4
121,276 + Psest_0124 0.50 -0.9
121,407 - Psest_0124 0.59 +0.3
121,755 - Psest_0124 0.82 -1.0
121,874 + Psest_0124 0.89 +2.4
121,875 - Psest_0124 0.89 +1.4
121,875 - Psest_0124 0.89 -2.1
121,875 - Psest_0124 0.89 -1.1
121,900 + -0.5
121,900 + -0.2
121,900 + +0.0
122,331 + Psest_0125 0.11 +2.4
122,331 + Psest_0125 0.11 +0.4
122,332 - Psest_0125 0.11 -0.1
122,332 - Psest_0125 0.11 +2.9
122,334 + Psest_0125 0.11 +3.5
122,335 - Psest_0125 0.12 -0.7
122,556 + Psest_0125 0.20 +0.5
122,556 + Psest_0125 0.20 +0.0
122,557 - Psest_0125 0.20 +0.2
122,557 - Psest_0125 0.20 +3.0
122,557 - Psest_0125 0.20 +2.9
122,616 + Psest_0125 0.22 +2.7
122,728 + Psest_0125 0.27 +1.1
122,728 + Psest_0125 0.27 -0.4
122,728 + -1.5
122,728 + Psest_0125 0.27 +0.5
122,728 + Psest_0125 0.27 -0.5
122,729 - Psest_0125 0.27 -0.8
122,729 - Psest_0125 0.27 +0.9
123,470 + Psest_0125 0.55 -3.1
123,470 + Psest_0125 0.55 -0.3
123,470 + Psest_0125 0.55 +0.0
123,470 + Psest_0125 0.55 -0.1
123,471 - Psest_0125 0.55 +1.4
123,471 - Psest_0125 0.55 -0.2
123,471 - Psest_0125 0.55 +1.7
123,471 - Psest_0125 0.55 +0.4
123,471 - Psest_0125 0.55 +0.6
123,474 + Psest_0125 0.55 -0.3
123,485 + Psest_0125 0.56 -1.5
123,522 + Psest_0125 0.57 +0.9
123,522 + Psest_0125 0.57 -0.1
123,522 + Psest_0125 0.57 -3.0
123,522 + Psest_0125 0.57 -0.3
123,522 + Psest_0125 0.57 +1.9
123,523 - Psest_0125 0.57 -0.7
123,523 - Psest_0125 0.57 -3.2
123,523 - Psest_0125 0.57 +0.2
123,544 - Psest_0125 0.58 -0.2
123,648 + Psest_0125 0.62 -1.2
123,648 + Psest_0125 0.62 -0.6
123,657 + Psest_0125 0.63 -0.4
123,657 + Psest_0125 0.63 -1.0
123,657 + Psest_0125 0.63 +0.9
123,658 - Psest_0125 0.63 -0.6
123,658 - Psest_0125 0.63 +0.1
124,254 + Psest_0125 0.86 +0.9
124,254 + Psest_0125 0.86 -1.6
124,598 + -0.8
124,599 - -0.6
125,048 + Psest_0126 0.41 +1.2
125,048 + Psest_0126 0.41 +1.3
125,048 + Psest_0126 0.41 -0.4
125,048 + Psest_0126 0.41 +0.6
125,049 - Psest_0126 0.41 +0.0
125,049 - Psest_0126 0.41 +0.1
125,049 - Psest_0126 0.41 +1.5
125,049 - Psest_0126 0.41 +0.1
125,052 - Psest_0126 0.41 +0.0
125,111 + Psest_0126 0.47 -0.3
125,112 - Psest_0126 0.47 -1.2
125,240 + Psest_0126 0.60 -0.8
125,348 + Psest_0126 0.70 -2.1
125,348 + Psest_0126 0.70 +2.4
125,348 + Psest_0126 0.70 -1.3
125,349 - Psest_0126 0.70 -1.4
125,349 - Psest_0126 0.70 +0.8
125,349 - Psest_0126 0.70 -0.4
125,349 - Psest_0126 0.70 +0.5
125,349 - Psest_0126 0.70 +1.3
125,582 + -1.2
125,583 - +1.1

Or see this region's nucleotide sequence