Experiment: Cisplatin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2776 and Psest_2777 overlap by 4 nucleotides Psest_2777 and Psest_2778 are separated by 158 nucleotides Psest_2778 and Psest_2779 are separated by 98 nucleotides Psest_2779 and Psest_2780 are separated by 297 nucleotides Psest_2780 and Psest_2781 are separated by 92 nucleotides
Psest_2776: Psest_2776 - Uncharacterized protein conserved in bacteria, at 2,973,797 to 2,974,084
_2776
Psest_2777: Psest_2777 - hypothetical protein, at 2,974,081 to 2,974,308
_2777
Psest_2778: Psest_2778 - Parvulin-like peptidyl-prolyl isomerase, at 2,974,467 to 2,974,748
_2778
Psest_2779: Psest_2779 - Methyl-accepting chemotaxis protein, at 2,974,847 to 2,976,442
_2779
Psest_2780: Psest_2780 - Protein of unknown function (DUF3478)., at 2,976,740 to 2,977,108
_2780
Psest_2781: Psest_2781 - Domain of unknown function (DUF3597)., at 2,977,201 to 2,977,662
_2781
Position (kb)
2974
2975
2976
2977 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2974.300 kb on - strand at 2974.447 kb on - strand at 2974.653 kb on - strand, within Psest_2778 at 2974.657 kb on + strand, within Psest_2778 at 2974.657 kb on + strand, within Psest_2778 at 2974.657 kb on + strand, within Psest_2778 at 2974.657 kb on + strand, within Psest_2778 at 2974.658 kb on - strand, within Psest_2778 at 2975.467 kb on + strand, within Psest_2779 at 2975.527 kb on + strand, within Psest_2779 at 2975.527 kb on + strand, within Psest_2779 at 2975.528 kb on - strand, within Psest_2779 at 2975.528 kb on - strand, within Psest_2779 at 2975.528 kb on - strand, within Psest_2779 at 2975.724 kb on + strand, within Psest_2779 at 2975.724 kb on + strand, within Psest_2779 at 2975.725 kb on - strand, within Psest_2779 at 2975.986 kb on + strand, within Psest_2779 at 2976.281 kb on - strand, within Psest_2779 at 2976.357 kb on + strand at 2976.358 kb on - strand at 2976.404 kb on + strand at 2976.483 kb on + strand at 2976.876 kb on - strand, within Psest_2780 at 2977.135 kb on + strand at 2977.135 kb on + strand at 2977.136 kb on - strand at 2977.136 kb on - strand at 2977.136 kb on - strand at 2977.136 kb on - strand at 2977.172 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml remove 2,974,300 - -1.2 2,974,447 - +1.0 2,974,653 - Psest_2778 0.66 -1.1 2,974,657 + Psest_2778 0.67 -0.1 2,974,657 + Psest_2778 0.67 +0.4 2,974,657 + Psest_2778 0.67 -1.2 2,974,657 + Psest_2778 0.67 -0.1 2,974,658 - Psest_2778 0.68 +0.6 2,975,467 + Psest_2779 0.39 -0.2 2,975,527 + Psest_2779 0.43 -0.2 2,975,527 + Psest_2779 0.43 -1.2 2,975,528 - Psest_2779 0.43 +0.1 2,975,528 - Psest_2779 0.43 +0.1 2,975,528 - Psest_2779 0.43 -1.5 2,975,724 + Psest_2779 0.55 +0.8 2,975,724 + Psest_2779 0.55 -1.1 2,975,725 - Psest_2779 0.55 -0.8 2,975,986 + Psest_2779 0.71 -0.7 2,976,281 - Psest_2779 0.90 +0.5 2,976,357 + -1.4 2,976,358 - -0.9 2,976,404 + -0.2 2,976,483 + +0.4 2,976,876 - Psest_2780 0.37 -0.7 2,977,135 + +0.7 2,977,135 + -2.9 2,977,136 - +0.3 2,977,136 - -0.4 2,977,136 - -0.9 2,977,136 - -0.1 2,977,172 + -0.2
Or see this region's nucleotide sequence