Experiment: Cisplatin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1542 and Psest_1543 are separated by 179 nucleotides Psest_1543 and Psest_1544 are separated by 26 nucleotides Psest_1544 and Psest_1545 are separated by 128 nucleotides
Psest_1542: Psest_1542 - Uncharacterized proteins, homologs of lactam utilization protein B, at 1,641,082 to 1,641,831
_1542
Psest_1543: Psest_1543 - Predicted transcription regulator, contains HTH domain (MarR family), at 1,642,011 to 1,642,538
_1543
Psest_1544: Psest_1544 - single-stranded-DNA-specific exonuclease RecJ, at 1,642,565 to 1,644,280
_1544
Psest_1545: Psest_1545 - Anaerobic dehydrogenases, typically selenocysteine-containing, at 1,644,409 to 1,646,502
_1545
Position (kb)
1642
1643
1644
1645 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1641.654 kb on + strand, within Psest_1542 at 1641.817 kb on + strand at 1641.818 kb on - strand at 1641.818 kb on - strand at 1641.818 kb on - strand at 1641.820 kb on + strand at 1641.820 kb on + strand at 1641.820 kb on + strand at 1641.821 kb on - strand at 1641.881 kb on + strand at 1641.881 kb on + strand at 1641.892 kb on + strand at 1641.897 kb on + strand at 1641.898 kb on - strand at 1641.904 kb on - strand at 1641.904 kb on - strand at 1641.930 kb on + strand at 1641.930 kb on + strand at 1641.931 kb on - strand at 1641.953 kb on + strand at 1641.954 kb on - strand at 1642.290 kb on + strand, within Psest_1543 at 1642.290 kb on + strand, within Psest_1543 at 1642.290 kb on + strand, within Psest_1543 at 1642.291 kb on - strand, within Psest_1543 at 1642.291 kb on - strand, within Psest_1543 at 1642.291 kb on - strand, within Psest_1543 at 1642.356 kb on + strand, within Psest_1543 at 1642.357 kb on - strand, within Psest_1543 at 1642.503 kb on + strand at 1642.504 kb on - strand at 1642.504 kb on - strand at 1642.570 kb on + strand at 1642.704 kb on - strand at 1642.704 kb on - strand at 1642.705 kb on + strand at 1642.705 kb on + strand at 1642.705 kb on + strand at 1642.705 kb on + strand at 1642.705 kb on + strand at 1642.705 kb on + strand at 1642.705 kb on + strand at 1642.706 kb on - strand at 1642.706 kb on - strand at 1642.706 kb on - strand at 1642.706 kb on - strand at 1642.706 kb on - strand at 1642.821 kb on + strand, within Psest_1544 at 1642.821 kb on + strand, within Psest_1544 at 1642.822 kb on - strand, within Psest_1544 at 1642.827 kb on + strand, within Psest_1544 at 1642.827 kb on + strand, within Psest_1544 at 1642.827 kb on + strand, within Psest_1544 at 1642.827 kb on + strand, within Psest_1544 at 1642.827 kb on + strand, within Psest_1544 at 1642.828 kb on - strand, within Psest_1544 at 1642.828 kb on - strand, within Psest_1544 at 1642.828 kb on - strand, within Psest_1544 at 1642.828 kb on - strand, within Psest_1544 at 1642.889 kb on + strand, within Psest_1544 at 1643.141 kb on + strand, within Psest_1544 at 1643.141 kb on + strand, within Psest_1544 at 1643.141 kb on + strand, within Psest_1544 at 1643.141 kb on + strand, within Psest_1544 at 1643.141 kb on + strand, within Psest_1544 at 1643.141 kb on + strand, within Psest_1544 at 1643.141 kb on + strand, within Psest_1544 at 1643.141 kb on + strand, within Psest_1544 at 1643.142 kb on - strand, within Psest_1544 at 1643.142 kb on - strand, within Psest_1544 at 1643.142 kb on - strand, within Psest_1544 at 1643.142 kb on - strand, within Psest_1544 at 1643.142 kb on - strand, within Psest_1544 at 1643.142 kb on - strand, within Psest_1544 at 1643.142 kb on - strand, within Psest_1544 at 1643.142 kb on - strand, within Psest_1544 at 1644.054 kb on + strand, within Psest_1544 at 1644.207 kb on - strand at 1644.303 kb on - strand at 1644.369 kb on - strand at 1644.540 kb on + strand at 1644.718 kb on + strand, within Psest_1545 at 1644.745 kb on + strand, within Psest_1545 at 1644.769 kb on + strand, within Psest_1545 at 1644.769 kb on + strand, within Psest_1545 at 1644.769 kb on + strand, within Psest_1545 at 1644.769 kb on + strand, within Psest_1545 at 1644.770 kb on - strand, within Psest_1545 at 1644.770 kb on - strand, within Psest_1545 at 1644.770 kb on - strand, within Psest_1545 at 1644.770 kb on - strand, within Psest_1545 at 1644.856 kb on + strand, within Psest_1545 at 1644.857 kb on - strand, within Psest_1545 at 1644.872 kb on + strand, within Psest_1545 at 1644.873 kb on - strand, within Psest_1545 at 1644.873 kb on - strand, within Psest_1545
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml remove 1,641,654 + Psest_1542 0.76 +0.5 1,641,817 + +0.8 1,641,818 - +0.3 1,641,818 - -0.1 1,641,818 - -0.4 1,641,820 + +0.1 1,641,820 + +1.5 1,641,820 + -2.9 1,641,821 - -1.2 1,641,881 + +0.6 1,641,881 + +0.2 1,641,892 + +0.4 1,641,897 + -3.9 1,641,898 - -1.7 1,641,904 - -0.1 1,641,904 - +0.3 1,641,930 + +0.7 1,641,930 + -0.8 1,641,931 - -1.7 1,641,953 + -0.7 1,641,954 - +0.6 1,642,290 + Psest_1543 0.53 +1.1 1,642,290 + Psest_1543 0.53 -2.1 1,642,290 + Psest_1543 0.53 -0.8 1,642,291 - Psest_1543 0.53 +0.1 1,642,291 - Psest_1543 0.53 -1.0 1,642,291 - Psest_1543 0.53 -1.2 1,642,356 + Psest_1543 0.65 +1.2 1,642,357 - Psest_1543 0.66 -2.3 1,642,503 + -0.5 1,642,504 - -0.9 1,642,504 - +2.9 1,642,570 + -2.1 1,642,704 - -2.3 1,642,704 - -2.5 1,642,705 + +0.1 1,642,705 + -2.3 1,642,705 + -1.5 1,642,705 + -0.8 1,642,705 + -2.1 1,642,705 + -1.8 1,642,705 + -1.4 1,642,706 - -3.4 1,642,706 - -1.4 1,642,706 - -2.0 1,642,706 - -1.1 1,642,706 - -3.0 1,642,821 + Psest_1544 0.15 -1.2 1,642,821 + Psest_1544 0.15 -2.2 1,642,822 - Psest_1544 0.15 +0.3 1,642,827 + Psest_1544 0.15 -2.3 1,642,827 + Psest_1544 0.15 -2.4 1,642,827 + Psest_1544 0.15 -2.7 1,642,827 + Psest_1544 0.15 -1.2 1,642,827 + Psest_1544 0.15 -1.5 1,642,828 - Psest_1544 0.15 -1.7 1,642,828 - Psest_1544 0.15 -0.5 1,642,828 - Psest_1544 0.15 -1.3 1,642,828 - Psest_1544 0.15 -0.8 1,642,889 + Psest_1544 0.19 -2.8 1,643,141 + Psest_1544 0.34 -2.4 1,643,141 + Psest_1544 0.34 -2.1 1,643,141 + Psest_1544 0.34 -2.3 1,643,141 + Psest_1544 0.34 -2.1 1,643,141 + Psest_1544 0.34 -0.8 1,643,141 + Psest_1544 0.34 +0.5 1,643,141 + Psest_1544 0.34 -4.1 1,643,141 + Psest_1544 0.34 -0.8 1,643,142 - Psest_1544 0.34 -0.2 1,643,142 - Psest_1544 0.34 -3.4 1,643,142 - Psest_1544 0.34 -2.7 1,643,142 - Psest_1544 0.34 -1.6 1,643,142 - Psest_1544 0.34 -1.5 1,643,142 - Psest_1544 0.34 -0.4 1,643,142 - Psest_1544 0.34 +0.3 1,643,142 - Psest_1544 0.34 -1.2 1,644,054 + Psest_1544 0.87 -0.8 1,644,207 - -2.2 1,644,303 - -0.4 1,644,369 - +0.2 1,644,540 + +0.3 1,644,718 + Psest_1545 0.15 -0.1 1,644,745 + Psest_1545 0.16 +0.9 1,644,769 + Psest_1545 0.17 +0.6 1,644,769 + Psest_1545 0.17 +0.0 1,644,769 + Psest_1545 0.17 +0.8 1,644,769 + Psest_1545 0.17 -0.4 1,644,770 - Psest_1545 0.17 -0.5 1,644,770 - Psest_1545 0.17 -0.2 1,644,770 - Psest_1545 0.17 +0.3 1,644,770 - Psest_1545 0.17 +2.5 1,644,856 + Psest_1545 0.21 +0.1 1,644,857 - Psest_1545 0.21 +0.9 1,644,872 + Psest_1545 0.22 -0.8 1,644,873 - Psest_1545 0.22 -1.8 1,644,873 - Psest_1545 0.22 +0.3
Or see this region's nucleotide sequence