Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4169

Experiment: Cisplatin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4166 and Psest_4167 overlap by 4 nucleotidesPsest_4167 and Psest_4168 are separated by 132 nucleotidesPsest_4168 and Psest_4169 overlap by 4 nucleotidesPsest_4169 and Psest_4170 are separated by 3 nucleotidesPsest_4170 and Psest_4171 are separated by 1 nucleotides Psest_4166: Psest_4166 - Flagellar biosynthesis/type III secretory pathway chaperone, at 4,346,122 to 4,346,562 _4166 Psest_4167: Psest_4167 - flagellar biosynthesis anti-sigma factor FlgM, at 4,346,559 to 4,346,834 _4167 Psest_4168: Psest_4168 - Flagellar FliJ protein., at 4,346,967 to 4,347,389 _4168 Psest_4169: Psest_4169 - ATPase FliI/YscN family, at 4,347,386 to 4,348,720 _4169 Psest_4170: Psest_4170 - Flagellar biosynthesis/type III secretory pathway protein, at 4,348,724 to 4,349,422 _4170 Psest_4171: Psest_4171 - Flagellar motor switch protein, at 4,349,424 to 4,350,491 _4171 Position (kb) 4347 4348 4349Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4346.437 kb on + strand, within Psest_4166at 4346.437 kb on + strand, within Psest_4166at 4346.437 kb on + strand, within Psest_4166at 4346.438 kb on - strand, within Psest_4166at 4346.438 kb on - strand, within Psest_4166at 4346.438 kb on - strand, within Psest_4166at 4346.438 kb on - strand, within Psest_4166at 4346.438 kb on - strand, within Psest_4166at 4346.498 kb on + strand, within Psest_4166at 4346.498 kb on + strand, within Psest_4166at 4346.498 kb on + strand, within Psest_4166at 4346.498 kb on + strand, within Psest_4166at 4346.499 kb on - strand, within Psest_4166at 4346.499 kb on - strand, within Psest_4166at 4346.499 kb on - strand, within Psest_4166at 4346.581 kb on + strandat 4346.858 kb on - strandat 4346.889 kb on + strandat 4346.889 kb on + strandat 4346.889 kb on + strandat 4346.890 kb on - strandat 4346.890 kb on - strandat 4346.890 kb on - strandat 4346.890 kb on - strandat 4346.892 kb on + strandat 4346.892 kb on + strandat 4346.893 kb on - strandat 4346.893 kb on - strandat 4346.893 kb on - strandat 4346.893 kb on - strandat 4346.893 kb on - strandat 4346.893 kb on - strandat 4347.122 kb on + strand, within Psest_4168at 4347.123 kb on - strand, within Psest_4168at 4347.181 kb on + strand, within Psest_4168at 4347.181 kb on + strand, within Psest_4168at 4347.182 kb on - strand, within Psest_4168at 4347.196 kb on + strand, within Psest_4168at 4347.196 kb on + strand, within Psest_4168at 4347.196 kb on + strand, within Psest_4168at 4347.197 kb on - strand, within Psest_4168at 4347.197 kb on - strand, within Psest_4168at 4347.197 kb on - strand, within Psest_4168at 4347.576 kb on + strand, within Psest_4169at 4347.576 kb on + strand, within Psest_4169at 4347.577 kb on - strand, within Psest_4169at 4347.577 kb on - strand, within Psest_4169at 4347.781 kb on + strand, within Psest_4169at 4347.782 kb on - strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.788 kb on - strand, within Psest_4169at 4347.788 kb on - strand, within Psest_4169at 4347.984 kb on + strand, within Psest_4169at 4347.984 kb on + strand, within Psest_4169at 4347.984 kb on + strand, within Psest_4169at 4347.985 kb on - strand, within Psest_4169at 4348.220 kb on + strand, within Psest_4169at 4348.221 kb on - strand, within Psest_4169at 4348.457 kb on + strand, within Psest_4169at 4348.506 kb on + strand, within Psest_4169at 4348.506 kb on + strand, within Psest_4169at 4348.506 kb on + strand, within Psest_4169at 4348.506 kb on + strand, within Psest_4169at 4348.507 kb on - strand, within Psest_4169at 4348.572 kb on + strand, within Psest_4169at 4348.572 kb on + strand, within Psest_4169at 4348.573 kb on - strand, within Psest_4169at 4348.573 kb on - strand, within Psest_4169at 4348.573 kb on - strand, within Psest_4169at 4348.573 kb on - strand, within Psest_4169at 4348.928 kb on - strand, within Psest_4170at 4349.079 kb on + strand, within Psest_4170at 4349.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml
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4,346,437 + Psest_4166 0.71 -1.4
4,346,437 + Psest_4166 0.71 -0.5
4,346,437 + Psest_4166 0.71 -0.7
4,346,438 - Psest_4166 0.72 -1.6
4,346,438 - Psest_4166 0.72 -2.0
4,346,438 - Psest_4166 0.72 +2.1
4,346,438 - Psest_4166 0.72 -1.4
4,346,438 - Psest_4166 0.72 -0.8
4,346,498 + Psest_4166 0.85 +2.3
4,346,498 + Psest_4166 0.85 +1.7
4,346,498 + Psest_4166 0.85 -0.4
4,346,498 + Psest_4166 0.85 -0.4
4,346,499 - Psest_4166 0.85 +1.2
4,346,499 - Psest_4166 0.85 -0.1
4,346,499 - Psest_4166 0.85 -1.1
4,346,581 + +1.0
4,346,858 - -0.4
4,346,889 + -0.4
4,346,889 + -1.9
4,346,889 + +1.1
4,346,890 - -0.4
4,346,890 - +0.9
4,346,890 - -0.6
4,346,890 - -0.1
4,346,892 + +0.8
4,346,892 + +0.3
4,346,893 - -1.4
4,346,893 - +2.7
4,346,893 - -2.0
4,346,893 - -0.3
4,346,893 - +1.4
4,346,893 - -1.2
4,347,122 + Psest_4168 0.37 -2.8
4,347,123 - Psest_4168 0.37 +0.5
4,347,181 + Psest_4168 0.51 +0.2
4,347,181 + Psest_4168 0.51 -1.1
4,347,182 - Psest_4168 0.51 -0.7
4,347,196 + Psest_4168 0.54 +0.0
4,347,196 + Psest_4168 0.54 -1.0
4,347,196 + Psest_4168 0.54 +0.6
4,347,197 - Psest_4168 0.54 -0.6
4,347,197 - Psest_4168 0.54 -1.1
4,347,197 - Psest_4168 0.54 -1.8
4,347,576 + Psest_4169 0.14 +0.3
4,347,576 + Psest_4169 0.14 +0.9
4,347,577 - Psest_4169 0.14 -1.5
4,347,577 - Psest_4169 0.14 -1.0
4,347,781 + Psest_4169 0.30 +0.2
4,347,782 - Psest_4169 0.30 +1.4
4,347,783 + Psest_4169 0.30 +1.2
4,347,783 + Psest_4169 0.30 -1.1
4,347,783 + Psest_4169 0.30 -3.3
4,347,783 + Psest_4169 0.30 -1.0
4,347,783 + Psest_4169 0.30 +0.4
4,347,783 + Psest_4169 0.30 -1.0
4,347,783 + Psest_4169 0.30 -0.8
4,347,783 + Psest_4169 0.30 -1.5
4,347,783 + Psest_4169 0.30 +0.4
4,347,783 + Psest_4169 0.30 +1.1
4,347,783 + Psest_4169 0.30 -0.6
4,347,784 - Psest_4169 0.30 -1.0
4,347,784 - Psest_4169 0.30 -0.2
4,347,784 - Psest_4169 0.30 -1.5
4,347,784 - Psest_4169 0.30 -0.1
4,347,784 - Psest_4169 0.30 +0.0
4,347,784 - Psest_4169 0.30 +2.3
4,347,784 - Psest_4169 0.30 +1.0
4,347,784 - Psest_4169 0.30 +1.1
4,347,784 - Psest_4169 0.30 -0.4
4,347,784 - Psest_4169 0.30 -1.4
4,347,784 - Psest_4169 0.30 -1.1
4,347,784 - Psest_4169 0.30 -0.9
4,347,784 - Psest_4169 0.30 -0.4
4,347,784 - Psest_4169 0.30 +1.6
4,347,784 - Psest_4169 0.30 -0.4
4,347,784 - Psest_4169 0.30 -1.4
4,347,784 - Psest_4169 0.30 -2.7
4,347,784 - Psest_4169 0.30 -1.4
4,347,784 - Psest_4169 0.30 -1.0
4,347,788 - Psest_4169 0.30 -2.6
4,347,788 - Psest_4169 0.30 -2.2
4,347,984 + Psest_4169 0.45 -0.5
4,347,984 + Psest_4169 0.45 -0.5
4,347,984 + Psest_4169 0.45 -2.5
4,347,985 - Psest_4169 0.45 -1.2
4,348,220 + Psest_4169 0.62 +0.8
4,348,221 - Psest_4169 0.63 -1.2
4,348,457 + Psest_4169 0.80 -1.4
4,348,506 + Psest_4169 0.84 +0.5
4,348,506 + Psest_4169 0.84 +0.2
4,348,506 + Psest_4169 0.84 +0.4
4,348,506 + Psest_4169 0.84 -1.2
4,348,507 - Psest_4169 0.84 +0.9
4,348,572 + Psest_4169 0.89 +1.8
4,348,572 + Psest_4169 0.89 -1.2
4,348,573 - Psest_4169 0.89 +1.0
4,348,573 - Psest_4169 0.89 -1.2
4,348,573 - Psest_4169 0.89 -1.8
4,348,573 - Psest_4169 0.89 -0.2
4,348,928 - Psest_4170 0.29 -0.0
4,349,079 + Psest_4170 0.51 +0.3
4,349,512 - -0.1

Or see this region's nucleotide sequence