Experiment: Cisplatin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0354 and Psest_0355 are separated by 219 nucleotides Psest_0355 and Psest_0356 are separated by 15 nucleotides Psest_0356 and Psest_0357 are separated by 202 nucleotides Psest_0357 and Psest_0358 overlap by 4 nucleotides
Psest_0354: Psest_0354 - Malate synthase G (EC 2.3.3.9) <small>(from data)</small>, at 379,042 to 381,222
_0354
Psest_0355: Psest_0355 - Glycine cleavage system regulatory protein, at 381,442 to 381,966
_0355
Psest_0356: Psest_0356 - rarD protein, at 381,982 to 382,872
_0356
Psest_0357: Psest_0357 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 383,075 to 383,842
_0357
Psest_0358: Psest_0358 - Neutral trehalase, at 383,839 to 385,443
_0358
Position (kb) 381
382
383 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 380.982 kb on - strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 380.982 kb on - strand, within Psest_0354 at 381.173 kb on + strand at 381.245 kb on + strand at 381.245 kb on + strand at 381.246 kb on - strand at 381.246 kb on - strand at 381.246 kb on - strand at 381.272 kb on + strand at 381.289 kb on + strand at 381.289 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.292 kb on + strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.293 kb on - strand at 381.386 kb on + strand at 381.386 kb on + strand at 381.387 kb on - strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.388 kb on + strand at 381.389 kb on - strand at 381.392 kb on + strand at 381.392 kb on + strand at 381.392 kb on + strand at 381.392 kb on + strand at 381.392 kb on + strand at 381.393 kb on - strand at 381.528 kb on + strand, within Psest_0355 at 381.629 kb on + strand, within Psest_0355 at 381.713 kb on + strand, within Psest_0355 at 381.996 kb on + strand at 381.996 kb on + strand at 381.996 kb on + strand at 381.997 kb on - strand at 381.997 kb on - strand at 382.025 kb on + strand at 382.553 kb on + strand, within Psest_0356 at 382.553 kb on + strand, within Psest_0356 at 382.553 kb on + strand, within Psest_0356 at 382.553 kb on + strand, within Psest_0356 at 382.553 kb on + strand, within Psest_0356 at 382.553 kb on + strand, within Psest_0356 at 382.553 kb on + strand, within Psest_0356 at 382.553 kb on + strand, within Psest_0356 at 382.553 kb on + strand, within Psest_0356 at 382.553 kb on + strand, within Psest_0356 at 382.553 kb on + strand, within Psest_0356 at 382.553 kb on + strand, within Psest_0356 at 382.554 kb on - strand, within Psest_0356 at 382.554 kb on - strand, within Psest_0356 at 382.554 kb on - strand, within Psest_0356 at 382.554 kb on - strand, within Psest_0356 at 382.554 kb on - strand, within Psest_0356 at 382.554 kb on - strand, within Psest_0356 at 382.556 kb on + strand, within Psest_0356 at 382.556 kb on + strand, within Psest_0356 at 382.557 kb on - strand, within Psest_0356 at 382.604 kb on + strand, within Psest_0356 at 382.604 kb on + strand, within Psest_0356 at 382.604 kb on + strand, within Psest_0356 at 382.604 kb on + strand, within Psest_0356 at 382.604 kb on + strand, within Psest_0356 at 382.604 kb on + strand, within Psest_0356 at 382.604 kb on + strand, within Psest_0356 at 382.604 kb on + strand, within Psest_0356 at 382.604 kb on + strand, within Psest_0356 at 382.604 kb on + strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.605 kb on - strand, within Psest_0356 at 382.715 kb on - strand, within Psest_0356 at 382.796 kb on + strand at 382.797 kb on - strand at 382.844 kb on + strand at 382.938 kb on - strand at 382.950 kb on + strand at 382.950 kb on + strand at 382.950 kb on + strand at 382.951 kb on - strand at 383.027 kb on + strand at 383.027 kb on + strand at 383.224 kb on - strand, within Psest_0357 at 383.224 kb on - strand, within Psest_0357 at 383.224 kb on - strand, within Psest_0357 at 383.394 kb on - strand, within Psest_0357 at 383.394 kb on - strand, within Psest_0357 at 383.541 kb on - strand, within Psest_0357 at 383.780 kb on + strand at 383.780 kb on + strand at 383.780 kb on + strand at 383.780 kb on + strand at 383.780 kb on + strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.820 kb on + strand at 383.828 kb on + strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.872 kb on + strand at 383.872 kb on + strand at 383.872 kb on + strand at 383.872 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.003 mg/ml remove 380,982 - Psest_0354 0.89 -0.7 380,982 - Psest_0354 0.89 +0.9 380,982 - Psest_0354 0.89 +1.4 380,982 - Psest_0354 0.89 +0.8 380,982 - Psest_0354 0.89 +0.8 381,173 + +0.7 381,245 + -0.4 381,245 + +0.8 381,246 - +1.6 381,246 - +0.9 381,246 - -0.4 381,272 + -1.1 381,289 + -2.0 381,289 + +1.3 381,292 + -1.5 381,292 + +2.9 381,292 + -2.1 381,292 + -1.9 381,292 + -0.8 381,292 + -1.0 381,292 + +0.9 381,293 - +0.4 381,293 - +0.8 381,293 - +1.9 381,293 - -1.4 381,293 - +0.7 381,293 - -0.1 381,293 - +0.1 381,293 - +0.4 381,293 - -0.4 381,293 - +0.6 381,293 - +2.1 381,293 - +1.5 381,293 - +1.4 381,293 - -2.6 381,293 - +1.0 381,293 - -3.1 381,386 + -0.4 381,386 + +2.5 381,387 - -2.7 381,388 + -0.2 381,388 + -2.2 381,388 + -2.6 381,388 + +0.1 381,388 + -0.5 381,388 + +0.4 381,388 + -1.7 381,388 + +3.0 381,388 + -1.7 381,388 + -0.2 381,388 + -0.5 381,389 - -0.7 381,392 + +1.3 381,392 + -0.7 381,392 + -0.6 381,392 + -0.6 381,392 + +0.4 381,393 - -0.8 381,528 + Psest_0355 0.16 -2.0 381,629 + Psest_0355 0.36 +0.3 381,713 + Psest_0355 0.52 +1.6 381,996 + +0.6 381,996 + -0.2 381,996 + -1.5 381,997 - -0.3 381,997 - -0.9 382,025 + +1.3 382,553 + Psest_0356 0.64 -0.1 382,553 + Psest_0356 0.64 +0.1 382,553 + Psest_0356 0.64 +0.3 382,553 + Psest_0356 0.64 +0.3 382,553 + Psest_0356 0.64 +0.2 382,553 + Psest_0356 0.64 +0.3 382,553 + Psest_0356 0.64 -1.1 382,553 + Psest_0356 0.64 -0.4 382,553 + Psest_0356 0.64 +1.2 382,553 + Psest_0356 0.64 -0.5 382,553 + Psest_0356 0.64 -0.3 382,553 + Psest_0356 0.64 -0.7 382,554 - Psest_0356 0.64 -0.8 382,554 - Psest_0356 0.64 -1.8 382,554 - Psest_0356 0.64 -1.8 382,554 - Psest_0356 0.64 +0.3 382,554 - Psest_0356 0.64 +0.3 382,554 - Psest_0356 0.64 +0.2 382,556 + Psest_0356 0.64 -0.1 382,556 + Psest_0356 0.64 -2.0 382,557 - Psest_0356 0.65 -0.1 382,604 + Psest_0356 0.70 -1.0 382,604 + Psest_0356 0.70 -0.1 382,604 + Psest_0356 0.70 -1.1 382,604 + Psest_0356 0.70 -1.3 382,604 + Psest_0356 0.70 -2.0 382,604 + Psest_0356 0.70 +0.5 382,604 + Psest_0356 0.70 -0.6 382,604 + Psest_0356 0.70 +0.4 382,604 + Psest_0356 0.70 -1.2 382,604 + Psest_0356 0.70 -1.3 382,605 - Psest_0356 0.70 -1.1 382,605 - Psest_0356 0.70 -1.9 382,605 - Psest_0356 0.70 -0.3 382,605 - Psest_0356 0.70 -2.8 382,605 - Psest_0356 0.70 -0.3 382,605 - Psest_0356 0.70 +1.3 382,605 - Psest_0356 0.70 -1.9 382,605 - Psest_0356 0.70 -1.7 382,605 - Psest_0356 0.70 +1.4 382,605 - Psest_0356 0.70 -1.8 382,605 - Psest_0356 0.70 -1.0 382,605 - Psest_0356 0.70 +2.8 382,605 - Psest_0356 0.70 -0.7 382,605 - Psest_0356 0.70 -1.2 382,715 - Psest_0356 0.82 +1.0 382,796 + -1.1 382,797 - +0.1 382,844 + +1.3 382,938 - -2.5 382,950 + -0.4 382,950 + +0.3 382,950 + +0.7 382,951 - +2.0 383,027 + +0.3 383,027 + +0.7 383,224 - Psest_0357 0.19 +0.8 383,224 - Psest_0357 0.19 -1.5 383,224 - Psest_0357 0.19 +1.7 383,394 - Psest_0357 0.42 -1.1 383,394 - Psest_0357 0.42 -1.5 383,541 - Psest_0357 0.61 +0.1 383,780 + -2.0 383,780 + +4.6 383,780 + +0.5 383,780 + -1.2 383,780 + +1.2 383,781 - -1.3 383,781 - +1.2 383,781 - +0.2 383,781 - +2.5 383,781 - -0.3 383,781 - +1.5 383,781 - -0.9 383,781 - +0.7 383,820 + -1.5 383,828 + +2.7 383,829 - -1.9 383,829 - -0.2 383,829 - +1.0 383,829 - +1.7 383,829 - +0.7 383,829 - -0.8 383,872 + +2.9 383,872 + -1.0 383,872 + -1.3 383,872 + +0.1
Or see this region's nucleotide sequence