Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0964

Experiment: Cisplatin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0962 and Psest_0963 are separated by 203 nucleotidesPsest_0963 and Psest_0964 are separated by 99 nucleotidesPsest_0964 and Psest_0965 are separated by 122 nucleotides Psest_0962: Psest_0962 - DNA repair protein RecN, at 1,041,809 to 1,043,482 _0962 Psest_0963: Psest_0963 - Molecular chaperone GrpE (heat shock protein), at 1,043,686 to 1,044,255 _0963 Psest_0964: Psest_0964 - chaperone protein DnaK, at 1,044,355 to 1,046,268 _0964 Psest_0965: Psest_0965 - chaperone protein DnaJ, at 1,046,391 to 1,047,521 _0965 Position (kb) 1044 1045 1046 1047Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1043.454 kb on + strandat 1043.455 kb on - strandat 1043.497 kb on + strandat 1043.518 kb on - strandat 1043.520 kb on - strandat 1043.541 kb on - strandat 1043.541 kb on - strandat 1043.633 kb on + strandat 1043.633 kb on + strandat 1043.633 kb on + strandat 1043.633 kb on + strandat 1043.633 kb on + strandat 1043.669 kb on + strandat 1043.671 kb on + strandat 1046.161 kb on + strandat 1046.161 kb on + strandat 1046.161 kb on + strandat 1046.161 kb on + strandat 1046.266 kb on + strandat 1046.266 kb on + strandat 1046.266 kb on + strandat 1046.266 kb on + strandat 1046.266 kb on + strandat 1046.266 kb on + strandat 1046.266 kb on + strandat 1046.266 kb on + strandat 1046.386 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0016 mg/ml
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1,043,454 + +0.2
1,043,455 - +0.5
1,043,497 + -0.5
1,043,518 - -0.8
1,043,520 - +1.1
1,043,541 - +0.1
1,043,541 - -2.7
1,043,633 + -2.8
1,043,633 + -2.4
1,043,633 + +1.5
1,043,633 + -1.4
1,043,633 + +0.6
1,043,669 + -0.5
1,043,671 + -0.4
1,046,161 + +0.7
1,046,161 + +0.2
1,046,161 + +1.9
1,046,161 + -1.0
1,046,266 + +3.4
1,046,266 + +0.5
1,046,266 + +0.1
1,046,266 + +0.4
1,046,266 + -0.4
1,046,266 + +0.6
1,046,266 + -0.0
1,046,266 + +0.1
1,046,386 + -0.3

Or see this region's nucleotide sequence