Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0565

Experiment: Cisplatin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0564 and Psest_0565 overlap by 1 nucleotidesPsest_0565 and Psest_0566 overlap by 4 nucleotides Psest_0564: Psest_0564 - urea ABC transporter, ATP-binding protein UrtD, at 619,768 to 620,619 _0564 Psest_0565: Psest_0565 - urea ABC transporter, permease protein UrtC, at 620,619 to 621,695 _0565 Psest_0566: Psest_0566 - urea ABC transporter, permease component (from data), at 621,692 to 623,263 _0566 Position (kb) 620 621 622Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 619.639 kb on + strandat 619.639 kb on + strandat 619.643 kb on + strandat 619.643 kb on + strandat 619.643 kb on + strandat 619.643 kb on + strandat 619.644 kb on - strandat 619.654 kb on + strandat 619.655 kb on - strandat 619.693 kb on + strandat 619.693 kb on + strandat 619.781 kb on + strandat 619.781 kb on + strandat 619.781 kb on + strandat 619.781 kb on + strandat 619.781 kb on + strandat 619.782 kb on - strandat 619.782 kb on - strandat 619.782 kb on - strandat 619.782 kb on - strandat 619.782 kb on - strandat 619.782 kb on - strandat 620.429 kb on + strand, within Psest_0564at 620.430 kb on - strand, within Psest_0564at 620.609 kb on - strandat 620.666 kb on - strandat 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 621.037 kb on + strand, within Psest_0565at 621.038 kb on - strand, within Psest_0565at 621.038 kb on - strand, within Psest_0565at 621.223 kb on + strand, within Psest_0565at 621.223 kb on + strand, within Psest_0565at 621.223 kb on + strand, within Psest_0565at 621.223 kb on + strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.551 kb on - strand, within Psest_0565at 621.680 kb on + strandat 621.680 kb on + strandat 621.681 kb on - strandat 621.681 kb on - strandat 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.906 kb on + strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 621.907 kb on - strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.444 kb on - strand, within Psest_0566at 622.444 kb on - strand, within Psest_0566at 622.452 kb on + strand, within Psest_0566at 622.453 kb on - strand, within Psest_0566at 622.453 kb on - strand, within Psest_0566

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0016 mg/ml
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619,639 + +0.6
619,639 + -1.2
619,643 + +1.5
619,643 + +0.0
619,643 + -0.5
619,643 + -0.0
619,644 - +1.9
619,654 + -0.1
619,655 - +2.2
619,693 + +0.2
619,693 + -0.6
619,781 + +1.0
619,781 + -0.1
619,781 + -0.2
619,781 + -0.8
619,781 + -0.0
619,782 - -1.4
619,782 - -2.2
619,782 - -0.7
619,782 - -0.3
619,782 - +0.1
619,782 - +0.9
620,429 + Psest_0564 0.78 +2.7
620,430 - Psest_0564 0.78 -0.5
620,609 - +0.5
620,666 - -0.3
620,878 + Psest_0565 0.24 -0.0
620,878 + Psest_0565 0.24 -1.1
620,878 + Psest_0565 0.24 +0.6
620,878 + Psest_0565 0.24 -1.2
620,878 + Psest_0565 0.24 -0.1
620,878 + Psest_0565 0.24 -0.1
621,037 + Psest_0565 0.39 -0.2
621,038 - Psest_0565 0.39 +0.7
621,038 - Psest_0565 0.39 +0.9
621,223 + Psest_0565 0.56 -0.2
621,223 + Psest_0565 0.56 +0.3
621,223 + Psest_0565 0.56 -1.9
621,223 + Psest_0565 0.56 -0.7
621,224 - Psest_0565 0.56 -1.0
621,224 - Psest_0565 0.56 -1.3
621,224 - Psest_0565 0.56 -0.4
621,224 - Psest_0565 0.56 +0.0
621,224 - Psest_0565 0.56 +0.1
621,224 - Psest_0565 0.56 +1.0
621,412 + Psest_0565 0.74 -1.9
621,412 + Psest_0565 0.74 -0.5
621,412 + Psest_0565 0.74 -1.0
621,412 + Psest_0565 0.74 -0.6
621,412 + Psest_0565 0.74 +0.3
621,412 + Psest_0565 0.74 +1.8
621,412 + Psest_0565 0.74 -0.3
621,412 + Psest_0565 0.74 -0.9
621,412 + Psest_0565 0.74 +1.1
621,412 + Psest_0565 0.74 -1.0
621,412 + Psest_0565 0.74 +0.8
621,412 + Psest_0565 0.74 -1.1
621,413 - Psest_0565 0.74 +0.2
621,413 - Psest_0565 0.74 -2.1
621,413 - Psest_0565 0.74 -1.5
621,413 - Psest_0565 0.74 -0.6
621,413 - Psest_0565 0.74 -1.3
621,413 - Psest_0565 0.74 +0.2
621,551 - Psest_0565 0.87 -1.3
621,680 + +0.3
621,680 + +0.7
621,681 - -0.7
621,681 - +1.1
621,906 + Psest_0566 0.14 -0.1
621,906 + Psest_0566 0.14 +0.0
621,906 + Psest_0566 0.14 -0.7
621,906 + Psest_0566 0.14 -0.6
621,906 + Psest_0566 0.14 +0.1
621,906 + Psest_0566 0.14 -0.3
621,906 + Psest_0566 0.14 -0.5
621,906 + Psest_0566 0.14 -1.7
621,906 + Psest_0566 0.14 +0.4
621,906 + Psest_0566 0.14 +0.3
621,906 + Psest_0566 0.14 -1.5
621,906 + Psest_0566 0.14 +1.0
621,906 + Psest_0566 0.14 +0.7
621,906 + Psest_0566 0.14 -2.9
621,906 + Psest_0566 0.14 +0.0
621,906 + Psest_0566 0.14 -1.4
621,907 - Psest_0566 0.14 -0.5
621,907 - Psest_0566 0.14 +0.2
621,907 - Psest_0566 0.14 +0.5
621,907 - Psest_0566 0.14 -1.3
621,907 - Psest_0566 0.14 +1.1
621,907 - Psest_0566 0.14 +2.9
621,907 - Psest_0566 0.14 -1.1
621,907 - Psest_0566 0.14 +0.4
621,907 - Psest_0566 0.14 -2.6
622,443 + Psest_0566 0.48 -1.3
622,443 + Psest_0566 0.48 -1.1
622,443 + Psest_0566 0.48 -1.7
622,443 + Psest_0566 0.48 -0.8
622,443 + Psest_0566 0.48 -0.3
622,443 + Psest_0566 0.48 -2.3
622,443 + Psest_0566 0.48 -0.9
622,443 + Psest_0566 0.48 -0.1
622,443 + Psest_0566 0.48 -1.9
622,443 + Psest_0566 0.48 -0.9
622,443 + Psest_0566 0.48 -0.2
622,443 + Psest_0566 0.48 -0.3
622,444 - Psest_0566 0.48 -0.2
622,444 - Psest_0566 0.48 -1.3
622,452 + Psest_0566 0.48 -0.9
622,453 - Psest_0566 0.48 +0.5
622,453 - Psest_0566 0.48 -1.3

Or see this region's nucleotide sequence