Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4192

Experiment: Cisplatin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4191 and Psest_4192 are separated by 4 nucleotidesPsest_4192 and Psest_4193 are separated by 74 nucleotides Psest_4191: Psest_4191 - Transcriptional regulator, at 4,368,744 to 4,369,664 _4191 Psest_4192: Psest_4192 - ATP-dependent DNA helicase RecG, at 4,369,669 to 4,371,741 _4192 Psest_4193: Psest_4193 - Predicted signal transduction protein, at 4,371,816 to 4,373,219 _4193 Position (kb) 4369 4370 4371 4372Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4368.712 kb on + strandat 4368.765 kb on + strandat 4368.765 kb on + strandat 4368.765 kb on + strandat 4369.039 kb on - strand, within Psest_4191at 4369.039 kb on - strand, within Psest_4191at 4369.053 kb on + strand, within Psest_4191at 4369.053 kb on + strand, within Psest_4191at 4369.053 kb on + strand, within Psest_4191at 4369.054 kb on - strand, within Psest_4191at 4369.054 kb on - strand, within Psest_4191at 4369.054 kb on - strand, within Psest_4191at 4369.054 kb on - strand, within Psest_4191at 4369.054 kb on - strand, within Psest_4191at 4369.054 kb on - strand, within Psest_4191at 4369.110 kb on + strand, within Psest_4191at 4369.239 kb on + strand, within Psest_4191at 4370.047 kb on + strand, within Psest_4192at 4370.047 kb on + strand, within Psest_4192at 4371.452 kb on - strand, within Psest_4192at 4371.452 kb on - strand, within Psest_4192at 4371.783 kb on + strandat 4371.784 kb on - strandat 4371.785 kb on + strandat 4371.821 kb on + strandat 4371.821 kb on + strandat 4371.822 kb on - strandat 4372.366 kb on + strand, within Psest_4193at 4372.533 kb on + strand, within Psest_4193at 4372.534 kb on - strand, within Psest_4193at 4372.537 kb on - strand, within Psest_4193at 4372.680 kb on + strand, within Psest_4193at 4372.698 kb on + strand, within Psest_4193at 4372.698 kb on + strand, within Psest_4193at 4372.698 kb on + strand, within Psest_4193at 4372.698 kb on + strand, within Psest_4193at 4372.698 kb on + strand, within Psest_4193at 4372.698 kb on + strand, within Psest_4193at 4372.698 kb on + strand, within Psest_4193at 4372.698 kb on + strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.699 kb on - strand, within Psest_4193at 4372.701 kb on - strand, within Psest_4193

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0016 mg/ml
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4,368,712 + +0.2
4,368,765 + -1.3
4,368,765 + -0.5
4,368,765 + -0.6
4,369,039 - Psest_4191 0.32 -2.2
4,369,039 - Psest_4191 0.32 -1.6
4,369,053 + Psest_4191 0.34 -0.5
4,369,053 + Psest_4191 0.34 -1.2
4,369,053 + Psest_4191 0.34 -0.5
4,369,054 - Psest_4191 0.34 +0.5
4,369,054 - Psest_4191 0.34 -0.0
4,369,054 - Psest_4191 0.34 -1.0
4,369,054 - Psest_4191 0.34 -1.6
4,369,054 - Psest_4191 0.34 -1.8
4,369,054 - Psest_4191 0.34 -1.8
4,369,110 + Psest_4191 0.40 -0.8
4,369,239 + Psest_4191 0.54 -0.3
4,370,047 + Psest_4192 0.18 -2.5
4,370,047 + Psest_4192 0.18 -1.0
4,371,452 - Psest_4192 0.86 -2.9
4,371,452 - Psest_4192 0.86 -1.0
4,371,783 + -0.0
4,371,784 - +0.0
4,371,785 + -0.0
4,371,821 + -1.2
4,371,821 + -0.2
4,371,822 - -0.2
4,372,366 + Psest_4193 0.39 +1.6
4,372,533 + Psest_4193 0.51 +0.4
4,372,534 - Psest_4193 0.51 +0.9
4,372,537 - Psest_4193 0.51 -0.0
4,372,680 + Psest_4193 0.62 -0.8
4,372,698 + Psest_4193 0.63 +0.7
4,372,698 + Psest_4193 0.63 -3.8
4,372,698 + Psest_4193 0.63 -0.3
4,372,698 + Psest_4193 0.63 +0.4
4,372,698 + Psest_4193 0.63 +1.3
4,372,698 + Psest_4193 0.63 +0.7
4,372,698 + Psest_4193 0.63 -0.8
4,372,698 + Psest_4193 0.63 +1.0
4,372,699 - Psest_4193 0.63 -0.8
4,372,699 - Psest_4193 0.63 -0.3
4,372,699 - Psest_4193 0.63 -0.7
4,372,699 - Psest_4193 0.63 +1.2
4,372,699 - Psest_4193 0.63 +0.3
4,372,699 - Psest_4193 0.63 +0.8
4,372,699 - Psest_4193 0.63 +0.9
4,372,699 - Psest_4193 0.63 -0.4
4,372,699 - Psest_4193 0.63 +0.9
4,372,699 - Psest_4193 0.63 +1.1
4,372,699 - Psest_4193 0.63 -2.7
4,372,699 - Psest_4193 0.63 -1.4
4,372,699 - Psest_4193 0.63 -0.1
4,372,699 - Psest_4193 0.63 +0.5
4,372,699 - Psest_4193 0.63 +0.9
4,372,699 - Psest_4193 0.63 -2.4
4,372,701 - Psest_4193 0.63 -0.3

Or see this region's nucleotide sequence