Experiment: Cisplatin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3362 and Psest_3363 are separated by 229 nucleotides Psest_3363 and Psest_3364 are separated by 108 nucleotides
Psest_3362: Psest_3362 - Uncharacterized protein conserved in bacteria, at 3,531,369 to 3,532,304
_3362
Psest_3363: Psest_3363 - hypothetical protein, at 3,532,534 to 3,532,827
_3363
Psest_3364: Psest_3364 - putative efflux protein, MATE family, at 3,532,936 to 3,534,309
_3364
Position (kb)
3532
3533 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3531.660 kb on - strand, within Psest_3362 at 3531.919 kb on + strand, within Psest_3362 at 3531.920 kb on - strand, within Psest_3362 at 3531.920 kb on - strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.923 kb on + strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3531.924 kb on - strand, within Psest_3362 at 3532.048 kb on + strand, within Psest_3362 at 3532.048 kb on + strand, within Psest_3362 at 3532.048 kb on + strand, within Psest_3362 at 3532.048 kb on + strand, within Psest_3362 at 3532.048 kb on + strand, within Psest_3362 at 3532.048 kb on + strand, within Psest_3362 at 3532.049 kb on - strand, within Psest_3362 at 3532.049 kb on - strand, within Psest_3362 at 3532.049 kb on - strand, within Psest_3362 at 3532.049 kb on - strand, within Psest_3362 at 3532.049 kb on - strand, within Psest_3362 at 3532.049 kb on - strand, within Psest_3362 at 3532.104 kb on + strand, within Psest_3362 at 3532.105 kb on - strand, within Psest_3362 at 3532.174 kb on + strand, within Psest_3362 at 3532.174 kb on + strand, within Psest_3362 at 3532.174 kb on + strand, within Psest_3362 at 3532.174 kb on + strand, within Psest_3362 at 3532.174 kb on + strand, within Psest_3362 at 3532.175 kb on - strand, within Psest_3362 at 3532.213 kb on + strand at 3532.214 kb on - strand at 3532.394 kb on + strand at 3532.405 kb on + strand at 3532.405 kb on + strand at 3532.405 kb on + strand at 3532.406 kb on - strand at 3532.406 kb on - strand at 3532.531 kb on + strand at 3532.531 kb on + strand at 3532.531 kb on + strand at 3532.532 kb on - strand at 3532.532 kb on - strand at 3532.532 kb on - strand at 3532.586 kb on + strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.587 kb on - strand, within Psest_3363 at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.905 kb on + strand at 3532.906 kb on - strand at 3532.906 kb on - strand at 3532.906 kb on - strand at 3532.906 kb on - strand at 3532.907 kb on + strand at 3532.908 kb on - strand at 3532.908 kb on - strand at 3533.116 kb on + strand, within Psest_3364 at 3533.117 kb on - strand, within Psest_3364 at 3533.345 kb on - strand, within Psest_3364 at 3533.345 kb on - strand, within Psest_3364 at 3533.345 kb on - strand, within Psest_3364 at 3533.390 kb on - strand, within Psest_3364 at 3533.617 kb on - strand, within Psest_3364 at 3533.738 kb on + strand, within Psest_3364
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0016 mg/ml remove 3,531,660 - Psest_3362 0.31 -2.7 3,531,919 + Psest_3362 0.59 -1.3 3,531,920 - Psest_3362 0.59 -0.5 3,531,920 - Psest_3362 0.59 -0.4 3,531,923 + Psest_3362 0.59 -1.2 3,531,923 + Psest_3362 0.59 +1.0 3,531,923 + Psest_3362 0.59 +0.6 3,531,923 + Psest_3362 0.59 +0.7 3,531,923 + Psest_3362 0.59 +4.2 3,531,923 + Psest_3362 0.59 -0.2 3,531,923 + Psest_3362 0.59 +0.1 3,531,923 + Psest_3362 0.59 -1.1 3,531,924 - Psest_3362 0.59 -0.8 3,531,924 - Psest_3362 0.59 -1.3 3,531,924 - Psest_3362 0.59 +0.2 3,531,924 - Psest_3362 0.59 +1.4 3,531,924 - Psest_3362 0.59 -0.0 3,531,924 - Psest_3362 0.59 +0.4 3,531,924 - Psest_3362 0.59 +0.2 3,531,924 - Psest_3362 0.59 +0.6 3,531,924 - Psest_3362 0.59 -2.8 3,531,924 - Psest_3362 0.59 +0.3 3,531,924 - Psest_3362 0.59 -0.7 3,531,924 - Psest_3362 0.59 -0.1 3,532,048 + Psest_3362 0.73 +0.1 3,532,048 + Psest_3362 0.73 -0.5 3,532,048 + Psest_3362 0.73 +0.1 3,532,048 + Psest_3362 0.73 +0.7 3,532,048 + Psest_3362 0.73 +0.9 3,532,048 + Psest_3362 0.73 -0.3 3,532,049 - Psest_3362 0.73 -0.4 3,532,049 - Psest_3362 0.73 -0.3 3,532,049 - Psest_3362 0.73 +1.5 3,532,049 - Psest_3362 0.73 -0.8 3,532,049 - Psest_3362 0.73 +1.0 3,532,049 - Psest_3362 0.73 +2.0 3,532,104 + Psest_3362 0.79 -1.6 3,532,105 - Psest_3362 0.79 -0.3 3,532,174 + Psest_3362 0.86 +1.4 3,532,174 + Psest_3362 0.86 -0.3 3,532,174 + Psest_3362 0.86 +0.7 3,532,174 + Psest_3362 0.86 -0.4 3,532,174 + Psest_3362 0.86 +0.3 3,532,175 - Psest_3362 0.86 +0.6 3,532,213 + +0.7 3,532,214 - -1.2 3,532,394 + -0.5 3,532,405 + +1.8 3,532,405 + +0.2 3,532,405 + +1.0 3,532,406 - +1.4 3,532,406 - +2.2 3,532,531 + +0.7 3,532,531 + -1.7 3,532,531 + +0.6 3,532,532 - -1.2 3,532,532 - -0.7 3,532,532 - +1.9 3,532,586 + Psest_3363 0.18 -1.1 3,532,587 - Psest_3363 0.18 -0.1 3,532,587 - Psest_3363 0.18 +0.4 3,532,587 - Psest_3363 0.18 -0.6 3,532,587 - Psest_3363 0.18 -1.0 3,532,587 - Psest_3363 0.18 -0.7 3,532,587 - Psest_3363 0.18 -1.7 3,532,587 - Psest_3363 0.18 -0.8 3,532,587 - Psest_3363 0.18 -0.4 3,532,587 - Psest_3363 0.18 -1.4 3,532,587 - Psest_3363 0.18 +0.5 3,532,905 + -0.6 3,532,905 + -0.1 3,532,905 + -2.4 3,532,905 + -1.1 3,532,905 + +0.1 3,532,905 + +0.1 3,532,905 + +1.2 3,532,905 + -0.5 3,532,905 + +0.8 3,532,905 + +0.1 3,532,905 + -0.6 3,532,905 + -3.4 3,532,906 - +1.5 3,532,906 - -0.9 3,532,906 - -0.0 3,532,906 - -0.5 3,532,907 + +1.3 3,532,908 - +0.3 3,532,908 - -0.3 3,533,116 + Psest_3364 0.13 +1.5 3,533,117 - Psest_3364 0.13 -0.9 3,533,345 - Psest_3364 0.30 +0.5 3,533,345 - Psest_3364 0.30 +2.7 3,533,345 - Psest_3364 0.30 -1.3 3,533,390 - Psest_3364 0.33 -0.9 3,533,617 - Psest_3364 0.50 +2.0 3,533,738 + Psest_3364 0.58 +1.4
Or see this region's nucleotide sequence