Experiment: Cisplatin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1904 and Psest_1905 are separated by 116 nucleotides Psest_1905 and Psest_1907 are separated by 284 nucleotides Psest_1907 and Psest_1908 are separated by 3 nucleotides Psest_1908 and Psest_1909 are separated by 3 nucleotides
Psest_1904: Psest_1904 - Arabinose efflux permease, at 2,014,700 to 2,015,851
_1904
Psest_1905: Psest_1905 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 2,015,968 to 2,016,513
_1905
Psest_1907: Psest_1907 - hypothetical protein, at 2,016,798 to 2,017,007
_1907
Psest_1908: Psest_1908 - hypothetical protein, at 2,017,011 to 2,017,205
_1908
Psest_1909: Psest_1909 - Phosphohistidine phosphatase SixA, at 2,017,209 to 2,017,766
_1909
Position (kb)
2015
2016
2017 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2015.322 kb on - strand, within Psest_1904 at 2015.360 kb on + strand, within Psest_1904 at 2015.363 kb on + strand, within Psest_1904 at 2015.364 kb on - strand, within Psest_1904 at 2015.364 kb on - strand, within Psest_1904 at 2015.364 kb on - strand, within Psest_1904 at 2015.548 kb on - strand, within Psest_1904 at 2015.608 kb on + strand, within Psest_1904 at 2015.609 kb on - strand, within Psest_1904 at 2015.816 kb on - strand at 2016.334 kb on + strand, within Psest_1905 at 2016.341 kb on + strand, within Psest_1905 at 2016.341 kb on + strand, within Psest_1905 at 2016.439 kb on - strand, within Psest_1905 at 2016.467 kb on - strand at 2016.565 kb on - strand at 2016.565 kb on - strand at 2016.565 kb on - strand at 2016.594 kb on + strand at 2016.594 kb on + strand at 2016.594 kb on + strand at 2016.594 kb on + strand at 2016.595 kb on - strand at 2016.595 kb on - strand at 2016.595 kb on - strand at 2016.683 kb on + strand at 2016.684 kb on - strand at 2016.764 kb on + strand at 2016.764 kb on + strand at 2016.764 kb on + strand at 2016.764 kb on + strand at 2016.765 kb on - strand at 2016.765 kb on - strand at 2016.769 kb on + strand at 2016.769 kb on + strand at 2016.769 kb on + strand at 2016.769 kb on + strand at 2016.770 kb on - strand at 2016.770 kb on - strand at 2016.770 kb on - strand at 2016.770 kb on - strand at 2016.770 kb on - strand at 2016.770 kb on - strand at 2016.773 kb on + strand at 2016.774 kb on - strand at 2016.848 kb on + strand, within Psest_1907 at 2017.129 kb on + strand, within Psest_1908 at 2017.203 kb on + strand at 2017.203 kb on + strand at 2017.312 kb on + strand, within Psest_1909 at 2017.313 kb on - strand, within Psest_1909 at 2017.313 kb on - strand, within Psest_1909 at 2017.313 kb on - strand, within Psest_1909 at 2017.466 kb on + strand, within Psest_1909 at 2017.467 kb on - strand, within Psest_1909 at 2017.467 kb on - strand, within Psest_1909 at 2017.467 kb on - strand, within Psest_1909
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0016 mg/ml remove 2,015,322 - Psest_1904 0.54 -2.2 2,015,360 + Psest_1904 0.57 -0.4 2,015,363 + Psest_1904 0.58 +0.2 2,015,364 - Psest_1904 0.58 -3.1 2,015,364 - Psest_1904 0.58 +0.5 2,015,364 - Psest_1904 0.58 +2.2 2,015,548 - Psest_1904 0.74 -0.1 2,015,608 + Psest_1904 0.79 +1.5 2,015,609 - Psest_1904 0.79 +3.7 2,015,816 - -0.7 2,016,334 + Psest_1905 0.67 +0.4 2,016,341 + Psest_1905 0.68 -1.2 2,016,341 + Psest_1905 0.68 -1.8 2,016,439 - Psest_1905 0.86 +0.3 2,016,467 - +0.1 2,016,565 - -1.9 2,016,565 - -1.8 2,016,565 - -1.2 2,016,594 + +0.4 2,016,594 + -0.2 2,016,594 + +0.4 2,016,594 + +1.6 2,016,595 - +0.4 2,016,595 - +0.7 2,016,595 - +1.0 2,016,683 + +0.6 2,016,684 - -2.4 2,016,764 + +0.5 2,016,764 + +1.2 2,016,764 + +1.4 2,016,764 + +0.6 2,016,765 - -0.7 2,016,765 - -1.4 2,016,769 + -0.1 2,016,769 + +0.2 2,016,769 + +1.8 2,016,769 + +0.8 2,016,770 - -0.2 2,016,770 - +1.0 2,016,770 - -1.9 2,016,770 - -1.1 2,016,770 - -0.2 2,016,770 - +0.1 2,016,773 + +0.6 2,016,774 - -1.1 2,016,848 + Psest_1907 0.24 -0.8 2,017,129 + Psest_1908 0.61 -1.6 2,017,203 + -0.1 2,017,203 + +1.4 2,017,312 + Psest_1909 0.18 +0.4 2,017,313 - Psest_1909 0.19 -0.2 2,017,313 - Psest_1909 0.19 +0.2 2,017,313 - Psest_1909 0.19 -0.3 2,017,466 + Psest_1909 0.46 +0.1 2,017,467 - Psest_1909 0.46 -0.6 2,017,467 - Psest_1909 0.46 -0.8 2,017,467 - Psest_1909 0.46 -0.8
Or see this region's nucleotide sequence