Experiment: Cisplatin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0772 and Psest_0773 overlap by 7 nucleotides Psest_0773 and Psest_0774 are separated by 13 nucleotides
Psest_0772: Psest_0772 - Cytochrome c553, at 840,685 to 841,371
_0772
Psest_0773: Psest_0773 - Cytosine deaminase and related metal-dependent hydrolases, at 841,365 to 842,600
_0773
Psest_0774: Psest_0774 - cytosine permease (from data) , at 842,614 to 843,891
_0774
Position (kb)
841
842
843 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 840.379 kb on + strand at 840.379 kb on + strand at 840.380 kb on - strand at 840.380 kb on - strand at 840.380 kb on - strand at 840.384 kb on + strand at 840.385 kb on - strand at 840.385 kb on - strand at 840.487 kb on + strand at 840.509 kb on + strand at 840.509 kb on + strand at 840.509 kb on + strand at 840.510 kb on - strand at 840.510 kb on - strand at 840.631 kb on + strand at 840.631 kb on + strand at 840.631 kb on + strand at 840.766 kb on + strand, within Psest_0772 at 840.767 kb on - strand, within Psest_0772 at 840.767 kb on - strand, within Psest_0772 at 840.838 kb on + strand, within Psest_0772 at 840.908 kb on - strand, within Psest_0772 at 841.015 kb on + strand, within Psest_0772 at 841.016 kb on - strand, within Psest_0772 at 841.016 kb on - strand, within Psest_0772 at 841.174 kb on + strand, within Psest_0772 at 841.175 kb on - strand, within Psest_0772 at 841.289 kb on - strand, within Psest_0772 at 841.289 kb on - strand, within Psest_0772 at 841.755 kb on - strand, within Psest_0773 at 841.858 kb on + strand, within Psest_0773 at 841.858 kb on + strand, within Psest_0773 at 841.859 kb on - strand, within Psest_0773 at 841.859 kb on - strand, within Psest_0773 at 841.903 kb on - strand, within Psest_0773 at 842.217 kb on - strand, within Psest_0773 at 842.454 kb on + strand, within Psest_0773 at 842.457 kb on + strand, within Psest_0773 at 842.457 kb on + strand, within Psest_0773 at 842.682 kb on + strand at 842.683 kb on - strand at 842.683 kb on - strand at 842.683 kb on - strand at 842.683 kb on - strand at 842.683 kb on - strand at 842.683 kb on - strand at 842.683 kb on - strand at 842.684 kb on + strand at 842.685 kb on - strand at 842.685 kb on - strand at 842.685 kb on - strand at 842.685 kb on - strand at 842.685 kb on - strand at 842.685 kb on - strand at 842.685 kb on - strand at 842.685 kb on - strand at 842.685 kb on - strand at 842.685 kb on - strand at 842.685 kb on - strand at 842.705 kb on - strand at 842.738 kb on + strand at 842.738 kb on + strand at 842.762 kb on + strand, within Psest_0774 at 842.762 kb on + strand, within Psest_0774 at 842.786 kb on + strand, within Psest_0774 at 842.787 kb on - strand, within Psest_0774 at 842.787 kb on - strand, within Psest_0774 at 842.787 kb on - strand, within Psest_0774 at 842.843 kb on + strand, within Psest_0774 at 842.843 kb on + strand, within Psest_0774 at 842.843 kb on + strand, within Psest_0774 at 842.843 kb on + strand, within Psest_0774 at 842.858 kb on - strand, within Psest_0774 at 842.918 kb on + strand, within Psest_0774 at 842.918 kb on + strand, within Psest_0774 at 842.918 kb on + strand, within Psest_0774 at 842.918 kb on + strand, within Psest_0774 at 842.918 kb on + strand, within Psest_0774 at 842.918 kb on + strand, within Psest_0774 at 842.918 kb on + strand, within Psest_0774 at 842.919 kb on - strand, within Psest_0774 at 842.919 kb on - strand, within Psest_0774 at 842.919 kb on - strand, within Psest_0774 at 842.919 kb on - strand, within Psest_0774 at 843.023 kb on + strand, within Psest_0774 at 843.023 kb on + strand, within Psest_0774 at 843.023 kb on + strand, within Psest_0774 at 843.024 kb on - strand, within Psest_0774 at 843.024 kb on - strand, within Psest_0774 at 843.385 kb on + strand, within Psest_0774 at 843.385 kb on + strand, within Psest_0774 at 843.560 kb on + strand, within Psest_0774 at 843.568 kb on + strand, within Psest_0774 at 843.568 kb on + strand, within Psest_0774 at 843.569 kb on - strand, within Psest_0774
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0016 mg/ml remove 840,379 + -0.5 840,379 + -0.2 840,380 - -0.6 840,380 - -0.5 840,380 - +0.0 840,384 + -0.0 840,385 - +0.1 840,385 - +1.7 840,487 + -1.7 840,509 + +0.8 840,509 + +1.3 840,509 + +0.0 840,510 - -2.2 840,510 - +0.2 840,631 + -0.0 840,631 + +0.1 840,631 + -0.1 840,766 + Psest_0772 0.12 +1.0 840,767 - Psest_0772 0.12 -0.7 840,767 - Psest_0772 0.12 +0.1 840,838 + Psest_0772 0.22 +0.3 840,908 - Psest_0772 0.32 -0.5 841,015 + Psest_0772 0.48 -0.2 841,016 - Psest_0772 0.48 +1.1 841,016 - Psest_0772 0.48 -1.5 841,174 + Psest_0772 0.71 -0.1 841,175 - Psest_0772 0.71 +1.8 841,289 - Psest_0772 0.88 +0.1 841,289 - Psest_0772 0.88 +0.5 841,755 - Psest_0773 0.32 -0.7 841,858 + Psest_0773 0.40 -2.5 841,858 + Psest_0773 0.40 -2.7 841,859 - Psest_0773 0.40 -0.2 841,859 - Psest_0773 0.40 +0.5 841,903 - Psest_0773 0.44 +0.1 842,217 - Psest_0773 0.69 -0.5 842,454 + Psest_0773 0.88 +0.5 842,457 + Psest_0773 0.88 -1.0 842,457 + Psest_0773 0.88 +0.7 842,682 + +1.0 842,683 - -1.7 842,683 - +1.2 842,683 - -0.8 842,683 - +2.3 842,683 - -0.9 842,683 - +0.1 842,683 - -1.4 842,684 + -0.2 842,685 - +0.5 842,685 - +0.5 842,685 - -0.3 842,685 - +0.8 842,685 - +1.1 842,685 - -0.9 842,685 - -0.5 842,685 - -0.7 842,685 - -1.5 842,685 - +0.9 842,685 - +0.1 842,705 - +0.3 842,738 + -0.9 842,738 + +0.8 842,762 + Psest_0774 0.12 -0.8 842,762 + Psest_0774 0.12 -0.1 842,786 + Psest_0774 0.13 -1.5 842,787 - Psest_0774 0.14 -0.5 842,787 - Psest_0774 0.14 -1.1 842,787 - Psest_0774 0.14 +0.9 842,843 + Psest_0774 0.18 +2.0 842,843 + Psest_0774 0.18 +0.3 842,843 + Psest_0774 0.18 -0.4 842,843 + Psest_0774 0.18 -0.9 842,858 - Psest_0774 0.19 -1.4 842,918 + Psest_0774 0.24 -0.5 842,918 + Psest_0774 0.24 +0.1 842,918 + Psest_0774 0.24 -1.4 842,918 + Psest_0774 0.24 -0.6 842,918 + Psest_0774 0.24 -1.0 842,918 + Psest_0774 0.24 +0.6 842,918 + Psest_0774 0.24 -1.4 842,919 - Psest_0774 0.24 -0.5 842,919 - Psest_0774 0.24 -0.5 842,919 - Psest_0774 0.24 +0.1 842,919 - Psest_0774 0.24 +0.5 843,023 + Psest_0774 0.32 +0.9 843,023 + Psest_0774 0.32 -0.8 843,023 + Psest_0774 0.32 +2.1 843,024 - Psest_0774 0.32 +0.0 843,024 - Psest_0774 0.32 +0.6 843,385 + Psest_0774 0.60 +1.1 843,385 + Psest_0774 0.60 +0.5 843,560 + Psest_0774 0.74 +0.5 843,568 + Psest_0774 0.75 -0.5 843,568 + Psest_0774 0.75 -0.4 843,569 - Psest_0774 0.75 -0.6
Or see this region's nucleotide sequence