Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3522

Experiment: Cisplatin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3521 and Psest_3522 are separated by 115 nucleotidesPsest_3522 and Psest_3523 are separated by 113 nucleotides Psest_3521: Psest_3521 - H+/gluconate symporter and related permeases, at 3,700,757 to 3,702,148 _3521 Psest_3522: Psest_3522 - 3-hydroxybutyrate dehydrogenase, at 3,702,264 to 3,703,034 _3522 Psest_3523: Psest_3523 - putative thymidine phosphorylase, at 3,703,148 to 3,704,728 _3523 Position (kb) 3702 3703 3704Strain fitness (log2 ratio) -2 -1 0 1 2at 3701.390 kb on + strand, within Psest_3521at 3701.431 kb on + strand, within Psest_3521at 3702.062 kb on + strandat 3702.062 kb on + strandat 3702.062 kb on + strandat 3702.062 kb on + strandat 3702.063 kb on - strandat 3702.063 kb on - strandat 3702.063 kb on - strandat 3702.063 kb on - strandat 3702.063 kb on - strandat 3702.125 kb on + strandat 3702.125 kb on + strandat 3702.126 kb on - strandat 3702.128 kb on + strandat 3702.128 kb on + strandat 3702.128 kb on + strandat 3702.128 kb on + strandat 3702.128 kb on + strandat 3702.129 kb on - strandat 3702.129 kb on - strandat 3702.129 kb on - strandat 3702.129 kb on - strandat 3702.129 kb on - strandat 3702.718 kb on - strand, within Psest_3522at 3702.718 kb on - strand, within Psest_3522at 3702.718 kb on - strand, within Psest_3522at 3702.832 kb on + strand, within Psest_3522at 3702.832 kb on + strand, within Psest_3522at 3702.832 kb on + strand, within Psest_3522at 3702.833 kb on - strand, within Psest_3522at 3702.833 kb on - strand, within Psest_3522at 3703.114 kb on + strandat 3703.114 kb on + strandat 3703.114 kb on + strandat 3703.114 kb on + strandat 3703.114 kb on + strandat 3703.114 kb on + strandat 3703.118 kb on + strandat 3703.225 kb on + strandat 3703.226 kb on - strandat 3703.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0016 mg/ml
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3,701,390 + Psest_3521 0.45 +0.6
3,701,431 + Psest_3521 0.48 +0.7
3,702,062 + +0.7
3,702,062 + +0.2
3,702,062 + -0.4
3,702,062 + -0.7
3,702,063 - +0.1
3,702,063 - -1.1
3,702,063 - -0.3
3,702,063 - -1.6
3,702,063 - -1.2
3,702,125 + +1.0
3,702,125 + -1.1
3,702,126 - +1.2
3,702,128 + +0.1
3,702,128 + +1.2
3,702,128 + +1.3
3,702,128 + -1.7
3,702,128 + -1.5
3,702,129 - +1.5
3,702,129 - +0.5
3,702,129 - +0.2
3,702,129 - -1.3
3,702,129 - -1.0
3,702,718 - Psest_3522 0.59 -0.1
3,702,718 - Psest_3522 0.59 -1.7
3,702,718 - Psest_3522 0.59 -0.4
3,702,832 + Psest_3522 0.74 +0.8
3,702,832 + Psest_3522 0.74 -0.9
3,702,832 + Psest_3522 0.74 -0.8
3,702,833 - Psest_3522 0.74 -0.1
3,702,833 - Psest_3522 0.74 -1.3
3,703,114 + +0.0
3,703,114 + -1.7
3,703,114 + +1.2
3,703,114 + +0.7
3,703,114 + -1.8
3,703,114 + +0.4
3,703,118 + -2.7
3,703,225 + +2.1
3,703,226 - +0.7
3,703,248 - +0.4

Or see this region's nucleotide sequence