Experiment: Cisplatin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3056 and Psest_3057 are separated by 150 nucleotides Psest_3057 and Psest_3058 are separated by 10 nucleotides Psest_3058 and Psest_3059 overlap by 4 nucleotides Psest_3059 and Psest_3060 are separated by 15 nucleotides Psest_3060 and Psest_3061 are separated by 292 nucleotides
Psest_3056: Psest_3056 - hypothetical protein, at 3,237,229 to 3,238,722
_3056
Psest_3057: Psest_3057 - Bacteriophage coat protein B., at 3,238,873 to 3,239,082
_3057
Psest_3058: Psest_3058 - hypothetical protein, at 3,239,093 to 3,239,308
_3058
Psest_3059: Psest_3059 - hypothetical protein, at 3,239,305 to 3,239,484
_3059
Psest_3060: Psest_3060 - hypothetical protein, at 3,239,500 to 3,239,859
_3060
Psest_3061: Psest_3061 - hypothetical protein, at 3,240,152 to 3,240,922
_3061
Position (kb)
3239
3240 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3238.506 kb on + strand, within Psest_3056 at 3238.594 kb on - strand at 3238.780 kb on + strand at 3238.780 kb on + strand at 3238.780 kb on + strand at 3238.789 kb on + strand at 3238.865 kb on + strand at 3238.893 kb on - strand at 3238.893 kb on - strand at 3238.893 kb on - strand at 3238.893 kb on - strand at 3238.893 kb on - strand at 3238.893 kb on - strand at 3238.893 kb on - strand at 3239.501 kb on + strand at 3239.692 kb on + strand, within Psest_3060 at 3239.692 kb on + strand, within Psest_3060 at 3239.693 kb on - strand, within Psest_3060 at 3239.693 kb on - strand, within Psest_3060 at 3239.705 kb on - strand, within Psest_3060 at 3239.790 kb on - strand, within Psest_3060 at 3239.790 kb on - strand, within Psest_3060 at 3239.963 kb on + strand at 3239.983 kb on + strand at 3239.983 kb on + strand at 3239.983 kb on + strand at 3239.983 kb on + strand at 3239.991 kb on + strand at 3240.014 kb on + strand at 3240.129 kb on + strand at 3240.363 kb on + strand, within Psest_3061 at 3240.364 kb on - strand, within Psest_3061 at 3240.364 kb on - strand, within Psest_3061 at 3240.449 kb on - strand, within Psest_3061 at 3240.459 kb on + strand, within Psest_3061 at 3240.473 kb on + strand, within Psest_3061 at 3240.473 kb on + strand, within Psest_3061 at 3240.506 kb on - strand, within Psest_3061 at 3240.579 kb on - strand, within Psest_3061 at 3240.602 kb on + strand, within Psest_3061 at 3240.602 kb on + strand, within Psest_3061 at 3240.602 kb on + strand, within Psest_3061 at 3240.603 kb on - strand, within Psest_3061 at 3240.603 kb on - strand, within Psest_3061 at 3240.603 kb on - strand, within Psest_3061 at 3240.606 kb on + strand, within Psest_3061 at 3240.606 kb on + strand, within Psest_3061 at 3240.606 kb on + strand, within Psest_3061 at 3240.606 kb on + strand, within Psest_3061 at 3240.606 kb on + strand, within Psest_3061 at 3240.607 kb on - strand, within Psest_3061 at 3240.607 kb on - strand, within Psest_3061 at 3240.607 kb on - strand, within Psest_3061 at 3240.657 kb on + strand, within Psest_3061 at 3240.657 kb on + strand, within Psest_3061 at 3240.658 kb on - strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.660 kb on - strand, within Psest_3061 at 3240.660 kb on - strand, within Psest_3061 at 3240.660 kb on - strand, within Psest_3061 at 3240.660 kb on - strand, within Psest_3061 at 3240.746 kb on + strand, within Psest_3061
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0016 mg/ml remove 3,238,506 + Psest_3056 0.85 -1.2 3,238,594 - -0.8 3,238,780 + +2.4 3,238,780 + +1.2 3,238,780 + +0.2 3,238,789 + -1.2 3,238,865 + +0.6 3,238,893 - -0.9 3,238,893 - -0.9 3,238,893 - -1.8 3,238,893 - -0.1 3,238,893 - -1.9 3,238,893 - +0.1 3,238,893 - -0.9 3,239,501 + +1.0 3,239,692 + Psest_3060 0.53 -1.5 3,239,692 + Psest_3060 0.53 -0.1 3,239,693 - Psest_3060 0.54 -0.2 3,239,693 - Psest_3060 0.54 -1.2 3,239,705 - Psest_3060 0.57 +1.1 3,239,790 - Psest_3060 0.81 -0.8 3,239,790 - Psest_3060 0.81 -0.4 3,239,963 + -0.0 3,239,983 + +0.0 3,239,983 + -0.6 3,239,983 + +0.6 3,239,983 + -3.0 3,239,991 + -0.5 3,240,014 + -0.3 3,240,129 + -0.7 3,240,363 + Psest_3061 0.27 -0.5 3,240,364 - Psest_3061 0.27 -1.2 3,240,364 - Psest_3061 0.27 +0.2 3,240,449 - Psest_3061 0.39 -0.4 3,240,459 + Psest_3061 0.40 -0.1 3,240,473 + Psest_3061 0.42 +0.3 3,240,473 + Psest_3061 0.42 +1.5 3,240,506 - Psest_3061 0.46 -0.8 3,240,579 - Psest_3061 0.55 +0.3 3,240,602 + Psest_3061 0.58 +0.5 3,240,602 + Psest_3061 0.58 +1.7 3,240,602 + Psest_3061 0.58 +0.7 3,240,603 - Psest_3061 0.58 -0.9 3,240,603 - Psest_3061 0.58 -1.0 3,240,603 - Psest_3061 0.58 -0.1 3,240,606 + Psest_3061 0.59 +0.4 3,240,606 + Psest_3061 0.59 -0.8 3,240,606 + Psest_3061 0.59 -0.6 3,240,606 + Psest_3061 0.59 +0.1 3,240,606 + Psest_3061 0.59 -1.6 3,240,607 - Psest_3061 0.59 +1.2 3,240,607 - Psest_3061 0.59 +1.6 3,240,607 - Psest_3061 0.59 +0.6 3,240,657 + Psest_3061 0.65 +1.2 3,240,657 + Psest_3061 0.65 -0.1 3,240,658 - Psest_3061 0.66 +4.0 3,240,659 + Psest_3061 0.66 +2.8 3,240,659 + Psest_3061 0.66 +0.2 3,240,659 + Psest_3061 0.66 +0.4 3,240,659 + Psest_3061 0.66 +1.0 3,240,659 + Psest_3061 0.66 -0.9 3,240,659 + Psest_3061 0.66 -0.1 3,240,659 + Psest_3061 0.66 -1.2 3,240,659 + Psest_3061 0.66 +1.4 3,240,659 + Psest_3061 0.66 +0.8 3,240,660 - Psest_3061 0.66 +0.6 3,240,660 - Psest_3061 0.66 +0.7 3,240,660 - Psest_3061 0.66 -2.6 3,240,660 - Psest_3061 0.66 -1.9 3,240,746 + Psest_3061 0.77 +0.9
Or see this region's nucleotide sequence