Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2164

Experiment: Cisplatin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2163 and Psest_2164 are separated by 102 nucleotidesPsest_2164 and Psest_2165 are separated by 27 nucleotidesPsest_2165 and Psest_2166 are separated by 16 nucleotides Psest_2163: Psest_2163 - Transcriptional regulator, at 2,315,713 to 2,316,633 _2163 Psest_2164: Psest_2164 - Uncharacterized conserved protein, at 2,316,736 to 2,317,560 _2164 Psest_2165: Psest_2165 - Cytochrome B561, at 2,317,588 to 2,318,427 _2165 Psest_2166: Psest_2166 - Membrane proteins related to metalloendopeptidases, at 2,318,444 to 2,319,292 _2166 Position (kb) 2316 2317 2318Strain fitness (log2 ratio) -3 -2 -1 0 1at 2315.765 kb on + strandat 2315.765 kb on + strandat 2315.915 kb on + strand, within Psest_2163at 2315.916 kb on - strand, within Psest_2163at 2315.916 kb on - strand, within Psest_2163at 2315.916 kb on - strand, within Psest_2163at 2316.211 kb on - strand, within Psest_2163at 2316.249 kb on + strand, within Psest_2163at 2316.249 kb on + strand, within Psest_2163at 2316.268 kb on + strand, within Psest_2163at 2316.437 kb on + strand, within Psest_2163at 2316.437 kb on + strand, within Psest_2163at 2316.438 kb on - strand, within Psest_2163at 2316.711 kb on + strandat 2316.712 kb on - strandat 2316.973 kb on + strand, within Psest_2164at 2316.973 kb on + strand, within Psest_2164at 2316.973 kb on + strand, within Psest_2164at 2316.974 kb on - strand, within Psest_2164at 2316.974 kb on - strand, within Psest_2164at 2316.974 kb on - strand, within Psest_2164at 2316.974 kb on - strand, within Psest_2164at 2316.974 kb on - strand, within Psest_2164at 2316.999 kb on + strand, within Psest_2164at 2316.999 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.004 kb on - strand, within Psest_2164at 2317.004 kb on - strand, within Psest_2164at 2317.004 kb on - strand, within Psest_2164at 2317.591 kb on + strandat 2317.591 kb on + strandat 2317.889 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.186 kb on - strand, within Psest_2165at 2318.225 kb on - strand, within Psest_2165at 2318.273 kb on + strand, within Psest_2165

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0016 mg/ml
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2,315,765 + -1.5
2,315,765 + +1.6
2,315,915 + Psest_2163 0.22 -0.0
2,315,916 - Psest_2163 0.22 -0.3
2,315,916 - Psest_2163 0.22 -0.0
2,315,916 - Psest_2163 0.22 -0.4
2,316,211 - Psest_2163 0.54 +0.3
2,316,249 + Psest_2163 0.58 +1.7
2,316,249 + Psest_2163 0.58 +0.9
2,316,268 + Psest_2163 0.60 +0.7
2,316,437 + Psest_2163 0.79 +1.3
2,316,437 + Psest_2163 0.79 +1.1
2,316,438 - Psest_2163 0.79 +1.5
2,316,711 + +0.9
2,316,712 - -2.8
2,316,973 + Psest_2164 0.29 -0.3
2,316,973 + Psest_2164 0.29 -0.9
2,316,973 + Psest_2164 0.29 +0.0
2,316,974 - Psest_2164 0.29 -0.6
2,316,974 - Psest_2164 0.29 -1.5
2,316,974 - Psest_2164 0.29 -1.7
2,316,974 - Psest_2164 0.29 -0.9
2,316,974 - Psest_2164 0.29 -0.7
2,316,999 + Psest_2164 0.32 -1.3
2,316,999 + Psest_2164 0.32 -1.3
2,317,003 + Psest_2164 0.32 +0.0
2,317,003 + Psest_2164 0.32 -0.1
2,317,003 + Psest_2164 0.32 +0.8
2,317,003 + Psest_2164 0.32 -0.2
2,317,003 + Psest_2164 0.32 -2.1
2,317,003 + Psest_2164 0.32 +0.4
2,317,003 + Psest_2164 0.32 -0.5
2,317,003 + Psest_2164 0.32 +0.1
2,317,003 + Psest_2164 0.32 -1.4
2,317,004 - Psest_2164 0.32 -0.7
2,317,004 - Psest_2164 0.32 +0.3
2,317,004 - Psest_2164 0.32 -1.7
2,317,591 + +1.0
2,317,591 + +1.1
2,317,889 + Psest_2165 0.36 +1.4
2,318,185 + Psest_2165 0.71 -1.4
2,318,185 + Psest_2165 0.71 +0.6
2,318,185 + Psest_2165 0.71 +1.3
2,318,185 + Psest_2165 0.71 -1.6
2,318,185 + Psest_2165 0.71 -0.2
2,318,186 - Psest_2165 0.71 +0.4
2,318,225 - Psest_2165 0.76 -0.1
2,318,273 + Psest_2165 0.82 -1.9

Or see this region's nucleotide sequence