Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2048
Experiment: Cisplatin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.0016 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,169,044 | + | Psest_2047 | 0.32 | -2.5 | |
2,169,120 | - | Psest_2047 | 0.38 | -0.0 | |
2,169,353 | - | Psest_2047 | 0.56 | +0.5 | |
2,169,459 | - | Psest_2047 | 0.65 | +1.1 | |
2,169,459 | - | Psest_2047 | 0.65 | +0.0 | |
2,169,945 | + | +0.5 | |||
2,170,198 | - | Psest_2048 | 0.45 | -0.4 | |
2,170,424 | - | Psest_2048 | 0.79 | -1.0 | |
2,170,516 | + | -2.0 | |||
2,170,516 | + | -0.4 | |||
2,170,714 | + | -1.0 | |||
2,170,715 | - | +0.9 | |||
2,170,728 | + | -0.7 | |||
2,170,778 | - | -0.8 | |||
2,171,228 | + | Psest_2049 | 0.13 | -0.5 | |
2,171,228 | + | Psest_2049 | 0.13 | +2.7 | |
2,171,229 | - | Psest_2049 | 0.13 | +1.4 | |
2,171,394 | - | Psest_2049 | 0.21 | +0.1 | |
2,171,405 | - | Psest_2049 | 0.21 | -1.9 |
Or see this region's nucleotide sequence