Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1673

Experiment: Cisplatin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1671 and Psest_1672 are separated by 71 nucleotidesPsest_1672 and Psest_1673 overlap by 4 nucleotidesPsest_1673 and Psest_1674 overlap by 1 nucleotides Psest_1671: Psest_1671 - DNA internalization-related competence protein ComEC/Rec2, at 1,779,258 to 1,781,483 _1671 Psest_1672: Psest_1672 - Biopolymer transport proteins, at 1,781,555 to 1,782,187 _1672 Psest_1673: Psest_1673 - Biopolymer transport protein, at 1,782,184 to 1,782,612 _1673 Psest_1674: Psest_1674 - tetraacyldisaccharide 4'-kinase, at 1,782,612 to 1,783,616 _1674 Position (kb) 1782 1783Strain fitness (log2 ratio) -2 -1 0 1at 1781.294 kb on + strandat 1781.295 kb on - strandat 1781.313 kb on - strandat 1781.385 kb on + strandat 1781.385 kb on + strandat 1781.514 kb on + strandat 1781.514 kb on + strandat 1781.514 kb on + strandat 1781.514 kb on + strandat 1781.519 kb on + strandat 1781.519 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0016 mg/ml
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1,781,294 + +0.8
1,781,295 - +0.0
1,781,313 - -0.0
1,781,385 + +0.7
1,781,385 + +0.4
1,781,514 + +0.0
1,781,514 + -0.3
1,781,514 + -1.6
1,781,514 + +0.2
1,781,519 + -1.8
1,781,519 + +0.9

Or see this region's nucleotide sequence