Experiment: Cisplatin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1669 and Psest_1670 are separated by 5 nucleotides Psest_1670 and Psest_1671 are separated by 148 nucleotides Psest_1671 and Psest_1672 are separated by 71 nucleotides Psest_1672 and Psest_1673 overlap by 4 nucleotides
Psest_1669: Psest_1669 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 1,777,341 to 1,778,588
_1669
Psest_1670: Psest_1670 - Uncharacterized protein conserved in bacteria, at 1,778,594 to 1,779,109
_1670
Psest_1671: Psest_1671 - DNA internalization-related competence protein ComEC/Rec2, at 1,779,258 to 1,781,483
_1671
Psest_1672: Psest_1672 - Biopolymer transport proteins, at 1,781,555 to 1,782,187
_1672
Psest_1673: Psest_1673 - Biopolymer transport protein, at 1,782,184 to 1,782,612
_1673
Position (kb)
1779
1780
1781
1782 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1778.586 kb on + strand at 1778.586 kb on + strand at 1779.174 kb on - strand at 1779.174 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.356 kb on - strand at 1779.371 kb on + strand at 1779.371 kb on + strand at 1779.587 kb on + strand, within Psest_1671 at 1779.690 kb on + strand, within Psest_1671 at 1779.725 kb on + strand, within Psest_1671 at 1779.953 kb on + strand, within Psest_1671 at 1780.037 kb on - strand, within Psest_1671 at 1780.496 kb on - strand, within Psest_1671 at 1780.496 kb on - strand, within Psest_1671 at 1781.102 kb on + strand, within Psest_1671 at 1781.103 kb on - strand, within Psest_1671 at 1781.167 kb on + strand, within Psest_1671 at 1781.168 kb on - strand, within Psest_1671 at 1781.168 kb on - strand, within Psest_1671 at 1781.294 kb on + strand at 1781.295 kb on - strand at 1781.313 kb on - strand at 1781.385 kb on + strand at 1781.385 kb on + strand at 1781.514 kb on + strand at 1781.514 kb on + strand at 1781.514 kb on + strand at 1781.514 kb on + strand at 1781.519 kb on + strand at 1781.519 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0016 mg/ml remove 1,778,586 + +0.6 1,778,586 + +0.2 1,779,174 - +0.9 1,779,174 - -0.3 1,779,188 - -0.8 1,779,188 - +0.5 1,779,188 - +0.3 1,779,188 - -0.6 1,779,188 - -0.6 1,779,188 - -0.6 1,779,188 - +0.1 1,779,188 - -1.2 1,779,188 - +0.4 1,779,356 - +0.6 1,779,371 + +2.6 1,779,371 + -3.0 1,779,587 + Psest_1671 0.15 -0.5 1,779,690 + Psest_1671 0.19 -0.9 1,779,725 + Psest_1671 0.21 -1.1 1,779,953 + Psest_1671 0.31 -2.1 1,780,037 - Psest_1671 0.35 -1.8 1,780,496 - Psest_1671 0.56 +1.0 1,780,496 - Psest_1671 0.56 +0.4 1,781,102 + Psest_1671 0.83 -0.3 1,781,103 - Psest_1671 0.83 -2.1 1,781,167 + Psest_1671 0.86 -0.4 1,781,168 - Psest_1671 0.86 -1.6 1,781,168 - Psest_1671 0.86 -1.0 1,781,294 + +0.8 1,781,295 - +0.0 1,781,313 - -0.0 1,781,385 + +0.7 1,781,385 + +0.4 1,781,514 + +0.0 1,781,514 + -0.3 1,781,514 + -1.6 1,781,514 + +0.2 1,781,519 + -1.8 1,781,519 + +0.9
Or see this region's nucleotide sequence