Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1035

Experiment: Cisplatin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1033 and Psest_1034 overlap by 1 nucleotidesPsest_1034 and Psest_1035 are separated by 37 nucleotidesPsest_1035 and Psest_1036 are separated by 407 nucleotides Psest_1033: Psest_1033 - hypothetical protein, at 1,119,600 to 1,120,325 _1033 Psest_1034: Psest_1034 - Uncharacterized protein conserved in bacteria, at 1,120,325 to 1,120,645 _1034 Psest_1035: Psest_1035 - hypothetical protein, at 1,120,683 to 1,121,114 _1035 Psest_1036: Psest_1036 - acetolactate synthase, large subunit, biosynthetic type, at 1,121,522 to 1,123,246 _1036 Position (kb) 1120 1121 1122Strain fitness (log2 ratio) -1 0 1 2at 1120.875 kb on + strand, within Psest_1035at 1120.875 kb on + strand, within Psest_1035at 1120.876 kb on - strand, within Psest_1035at 1120.876 kb on - strand, within Psest_1035at 1120.967 kb on + strand, within Psest_1035at 1120.967 kb on + strand, within Psest_1035at 1121.045 kb on - strand, within Psest_1035at 1121.045 kb on - strand, within Psest_1035at 1121.045 kb on - strand, within Psest_1035at 1121.121 kb on - strandat 1121.152 kb on + strandat 1121.153 kb on - strandat 1121.153 kb on - strandat 1121.154 kb on + strandat 1121.155 kb on - strandat 1121.303 kb on + strandat 1121.424 kb on + strandat 1121.424 kb on + strandat 1121.467 kb on + strandat 1121.467 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0016 mg/ml
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1,120,875 + Psest_1035 0.44 -0.6
1,120,875 + Psest_1035 0.44 -0.2
1,120,876 - Psest_1035 0.45 -0.0
1,120,876 - Psest_1035 0.45 -0.3
1,120,967 + Psest_1035 0.66 -0.7
1,120,967 + Psest_1035 0.66 -1.3
1,121,045 - Psest_1035 0.84 +0.2
1,121,045 - Psest_1035 0.84 -0.8
1,121,045 - Psest_1035 0.84 -0.5
1,121,121 - -1.0
1,121,152 + -0.9
1,121,153 - -0.5
1,121,153 - -0.9
1,121,154 + +1.1
1,121,155 - -1.0
1,121,303 + +2.4
1,121,424 + -1.3
1,121,424 + +1.4
1,121,467 + -1.1
1,121,467 + +0.1

Or see this region's nucleotide sequence