Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4170

Experiment: Neomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4169 and Psest_4170 are separated by 3 nucleotidesPsest_4170 and Psest_4171 are separated by 1 nucleotides Psest_4169: Psest_4169 - ATPase FliI/YscN family, at 4,347,386 to 4,348,720 _4169 Psest_4170: Psest_4170 - Flagellar biosynthesis/type III secretory pathway protein, at 4,348,724 to 4,349,422 _4170 Psest_4171: Psest_4171 - Flagellar motor switch protein, at 4,349,424 to 4,350,491 _4171 Position (kb) 4348 4349 4350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4347.781 kb on + strand, within Psest_4169at 4347.782 kb on - strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.783 kb on + strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.784 kb on - strand, within Psest_4169at 4347.788 kb on - strand, within Psest_4169at 4347.788 kb on - strand, within Psest_4169at 4347.984 kb on + strand, within Psest_4169at 4347.984 kb on + strand, within Psest_4169at 4347.984 kb on + strand, within Psest_4169at 4347.985 kb on - strand, within Psest_4169at 4348.220 kb on + strand, within Psest_4169at 4348.221 kb on - strand, within Psest_4169at 4348.457 kb on + strand, within Psest_4169at 4348.506 kb on + strand, within Psest_4169at 4348.506 kb on + strand, within Psest_4169at 4348.506 kb on + strand, within Psest_4169at 4348.506 kb on + strand, within Psest_4169at 4348.507 kb on - strand, within Psest_4169at 4348.572 kb on + strand, within Psest_4169at 4348.572 kb on + strand, within Psest_4169at 4348.573 kb on - strand, within Psest_4169at 4348.573 kb on - strand, within Psest_4169at 4348.573 kb on - strand, within Psest_4169at 4348.573 kb on - strand, within Psest_4169at 4348.928 kb on - strand, within Psest_4170at 4349.079 kb on + strand, within Psest_4170at 4349.512 kb on - strandat 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.125 kb on - strand, within Psest_4171at 4350.125 kb on - strand, within Psest_4171at 4350.125 kb on - strand, within Psest_4171at 4350.125 kb on - strand, within Psest_4171at 4350.125 kb on - strand, within Psest_4171at 4350.191 kb on - strand, within Psest_4171at 4350.191 kb on - strand, within Psest_4171at 4350.229 kb on + strand, within Psest_4171at 4350.229 kb on + strand, within Psest_4171at 4350.229 kb on + strand, within Psest_4171at 4350.229 kb on + strand, within Psest_4171at 4350.230 kb on - strand, within Psest_4171at 4350.230 kb on - strand, within Psest_4171

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Per-strain Table

Position Strand Gene LocusTag Fraction Neomycin 0.004 mg/ml
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4,347,781 + Psest_4169 0.30 +0.7
4,347,782 - Psest_4169 0.30 +0.0
4,347,783 + Psest_4169 0.30 +0.1
4,347,783 + Psest_4169 0.30 -0.8
4,347,783 + Psest_4169 0.30 -0.4
4,347,783 + Psest_4169 0.30 -1.8
4,347,783 + Psest_4169 0.30 +0.6
4,347,783 + Psest_4169 0.30 -1.0
4,347,783 + Psest_4169 0.30 +0.4
4,347,783 + Psest_4169 0.30 -0.2
4,347,783 + Psest_4169 0.30 -0.7
4,347,783 + Psest_4169 0.30 -0.7
4,347,783 + Psest_4169 0.30 -1.0
4,347,784 - Psest_4169 0.30 +0.5
4,347,784 - Psest_4169 0.30 -1.7
4,347,784 - Psest_4169 0.30 -2.8
4,347,784 - Psest_4169 0.30 -0.5
4,347,784 - Psest_4169 0.30 +2.6
4,347,784 - Psest_4169 0.30 -0.7
4,347,784 - Psest_4169 0.30 -2.5
4,347,784 - Psest_4169 0.30 -1.5
4,347,784 - Psest_4169 0.30 -0.8
4,347,784 - Psest_4169 0.30 +1.4
4,347,784 - Psest_4169 0.30 +2.0
4,347,784 - Psest_4169 0.30 -0.2
4,347,784 - Psest_4169 0.30 +1.2
4,347,784 - Psest_4169 0.30 +0.5
4,347,784 - Psest_4169 0.30 -0.1
4,347,784 - Psest_4169 0.30 -0.2
4,347,784 - Psest_4169 0.30 -0.5
4,347,784 - Psest_4169 0.30 +0.9
4,347,784 - Psest_4169 0.30 -1.8
4,347,788 - Psest_4169 0.30 +1.7
4,347,788 - Psest_4169 0.30 +0.2
4,347,984 + Psest_4169 0.45 +0.5
4,347,984 + Psest_4169 0.45 -0.2
4,347,984 + Psest_4169 0.45 -0.4
4,347,985 - Psest_4169 0.45 +1.2
4,348,220 + Psest_4169 0.62 +0.8
4,348,221 - Psest_4169 0.63 -1.3
4,348,457 + Psest_4169 0.80 -0.2
4,348,506 + Psest_4169 0.84 -0.2
4,348,506 + Psest_4169 0.84 -1.4
4,348,506 + Psest_4169 0.84 +0.0
4,348,506 + Psest_4169 0.84 +0.1
4,348,507 - Psest_4169 0.84 +1.2
4,348,572 + Psest_4169 0.89 +0.0
4,348,572 + Psest_4169 0.89 +1.2
4,348,573 - Psest_4169 0.89 +1.5
4,348,573 - Psest_4169 0.89 +0.6
4,348,573 - Psest_4169 0.89 -0.4
4,348,573 - Psest_4169 0.89 +2.1
4,348,928 - Psest_4170 0.29 +0.3
4,349,079 + Psest_4170 0.51 +1.4
4,349,512 - -0.1
4,349,722 + Psest_4171 0.28 +0.0
4,349,722 + Psest_4171 0.28 -0.6
4,349,722 + Psest_4171 0.28 -0.4
4,349,722 + Psest_4171 0.28 -0.2
4,349,722 + Psest_4171 0.28 -1.4
4,349,722 + Psest_4171 0.28 +0.7
4,349,722 + Psest_4171 0.28 +0.8
4,349,722 + Psest_4171 0.28 -0.3
4,349,722 + Psest_4171 0.28 -2.0
4,349,722 + Psest_4171 0.28 -2.2
4,349,722 + Psest_4171 0.28 -1.5
4,349,723 - Psest_4171 0.28 +0.5
4,349,723 - Psest_4171 0.28 +1.3
4,349,723 - Psest_4171 0.28 -0.1
4,349,723 - Psest_4171 0.28 +0.1
4,349,723 - Psest_4171 0.28 +0.7
4,349,723 - Psest_4171 0.28 +0.1
4,349,723 - Psest_4171 0.28 -0.6
4,350,124 + Psest_4171 0.66 -0.4
4,350,124 + Psest_4171 0.66 -0.0
4,350,124 + Psest_4171 0.66 +0.3
4,350,124 + Psest_4171 0.66 +0.3
4,350,124 + Psest_4171 0.66 -0.4
4,350,124 + Psest_4171 0.66 -0.1
4,350,124 + Psest_4171 0.66 -0.3
4,350,125 - Psest_4171 0.66 +1.3
4,350,125 - Psest_4171 0.66 -0.2
4,350,125 - Psest_4171 0.66 -1.0
4,350,125 - Psest_4171 0.66 -0.6
4,350,125 - Psest_4171 0.66 -0.4
4,350,191 - Psest_4171 0.72 +2.2
4,350,191 - Psest_4171 0.72 +1.2
4,350,229 + Psest_4171 0.75 -1.0
4,350,229 + Psest_4171 0.75 -0.8
4,350,229 + Psest_4171 0.75 -0.6
4,350,229 + Psest_4171 0.75 +0.2
4,350,230 - Psest_4171 0.75 -1.2
4,350,230 - Psest_4171 0.75 -0.1

Or see this region's nucleotide sequence