Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3937

Experiment: Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.004 mg/ml
4,108,447	+				+0.8
4,108,447	+				+0.9
4,108,447	+				+0.3
4,108,447	+				+0.2
4,108,448	-				+0.5
4,108,448	-				+0.7
4,108,477	+				-1.5
4,108,683	+				+2.0
4,108,684	-				+2.3
4,108,742	+				+0.3
4,108,906	-		Psest_3936	0.21	+0.9
4,108,906	-		Psest_3936	0.21	+3.1
4,108,906	-		Psest_3936	0.21	+1.8
4,108,906	-		Psest_3936	0.21	+2.3
4,108,919	-		Psest_3936	0.24	+2.6
4,108,919	-		Psest_3936	0.24	+1.1
4,109,303	-				+0.9
4,109,303	-				+3.1
4,109,362	+				+1.4
4,109,363	-				+2.2
4,109,686	-		Psest_3937	0.20	+1.5
4,110,216	-		Psest_3937	0.59	+1.8
4,110,480	+		Psest_3937	0.79	+2.3
4,110,699	+				+1.6
4,110,700	-				+2.3
4,110,751	-				+1.1
4,110,751	-				+0.6
4,110,751	-				+1.4
4,110,751	-				+1.6
4,110,751	-				+1.3
4,111,058	-		Psest_3938	0.66	-0.7
4,111,058	-		Psest_3938	0.66	-0.9
4,111,058	-		Psest_3938	0.66	+0.1
4,111,068	-		Psest_3938	0.69	-1.7
4,111,112	+		Psest_3938	0.81	+0.5
4,111,112	+		Psest_3938	0.81	+0.3
4,111,113	-		Psest_3938	0.81	-1.3
4,111,113	-		Psest_3938	0.81	-2.7
4,111,113	-		Psest_3938	0.81	+1.5
4,111,275	-				-0.7
4,111,275	-				-0.2
4,111,275	-				-0.9
4,111,293	+				-0.5
4,111,294	-				-2.2
4,111,294	-				+0.6
4,111,294	-				-1.2
4,111,294	-				+2.2
4,111,307	+				+0.3
4,111,324	-				+0.1
4,111,445	+		Psest_3939	0.38	-2.9
4,111,446	-		Psest_3939	0.39	+0.5
4,111,446	-		Psest_3939	0.39	+2.0
4,111,616	-				+1.3
4,111,649	+				-0.5
4,111,650	-				+0.8
4,111,650	-				-1.4
4,111,652	-				+0.9
4,111,652	-				-0.4
4,111,652	-				+1.5