Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3853

Experiment: Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.004 mg/ml
4,024,606	+		Psest_3852	0.22	+0.1
4,024,607	-		Psest_3852	0.22	-1.7
4,024,607	-		Psest_3852	0.22	-0.4
4,024,771	+		Psest_3852	0.36	-0.9
4,024,772	-		Psest_3852	0.36	-1.6
4,024,772	-		Psest_3852	0.36	+2.2
4,024,838	-		Psest_3852	0.41	+0.0
4,024,838	-		Psest_3852	0.41	+0.5
4,024,855	+		Psest_3852	0.43	+0.0
4,024,856	-		Psest_3852	0.43	+0.8
4,024,958	-		Psest_3852	0.51	+1.2
4,025,232	+		Psest_3852	0.74	+0.3
4,025,232	+		Psest_3852	0.74	-0.3
4,025,260	+		Psest_3852	0.76	+0.1
4,025,260	+		Psest_3852	0.76	-0.3
4,025,260	+		Psest_3852	0.76	+0.2
4,025,260	+		Psest_3852	0.76	+0.6
4,025,260	+		Psest_3852	0.76	+1.8
4,025,261	-		Psest_3852	0.76	-0.8
4,025,261	-		Psest_3852	0.76	-0.8
4,025,261	-		Psest_3852	0.76	+1.2
4,025,279	-		Psest_3852	0.78	+1.6
4,025,279	-		Psest_3852	0.78	-0.3
4,025,279	-		Psest_3852	0.78	+1.3
4,025,413	+		Psest_3852	0.89	-1.3
4,025,461	+				+0.5
4,025,461	+				+0.7
4,025,461	+				-2.1
4,025,462	-				-0.7
4,025,462	-				+0.9
4,025,462	-				-2.0
4,025,464	+				-1.4
4,025,465	-				-0.3
4,025,465	-				+0.9
4,025,465	-				+0.5
4,025,465	-				+1.7
4,025,465	-				-0.5
4,025,465	-				-0.3
4,025,465	-				-0.3
4,025,465	-				+0.3
4,025,465	-				+0.2
4,025,465	-				-1.5
4,025,465	-				+0.1
4,025,465	-				-1.6
4,025,465	-				+0.4
4,025,465	-				-0.1
4,025,500	+				-0.1
4,025,500	+				+0.7
4,025,500	+				+0.7
4,025,500	+				+0.8
4,025,500	+				-0.3
4,025,500	+				-0.3
4,025,500	+				-0.5
4,025,500	+				+0.9
4,025,501	-				+0.4
4,025,501	-				+0.8
4,025,501	-				+1.4
4,025,501	-				-1.0
4,025,501	-				+0.6
4,025,501	-				+0.0
4,025,501	-				+0.2
4,025,501	-				-2.0
4,025,501	-				+1.2
4,025,501	-				+1.0
4,025,501	-				-0.7
4,025,501	-				+0.3
4,025,501	-				+0.2
4,025,502	+				-0.0
4,025,503	-				+0.7
4,025,879	-		Psest_3853	0.42	-0.3
4,026,145	+		Psest_3853	0.75	-0.6
4,026,145	+		Psest_3853	0.75	-0.9
4,026,145	+		Psest_3853	0.75	+1.1
4,026,146	-		Psest_3853	0.76	+1.7
4,026,146	-		Psest_3853	0.76	+1.8
4,026,318	+				-0.7
4,026,318	+				+0.1
4,026,318	+				-0.4
4,026,318	+				-2.2
4,026,319	-				-1.7
4,026,319	-				+0.0
4,026,319	-				-0.6
4,026,319	-				-2.0
4,026,319	-				+0.0
4,026,319	-				+0.4
4,026,376	+				-0.9
4,026,583	+		Psest_3854	0.35	-1.5
4,026,584	-		Psest_3854	0.35	+0.7
4,026,685	+		Psest_3854	0.50	-0.5
4,026,685	+		Psest_3854	0.50	+0.6
4,026,685	+		Psest_3854	0.50	-0.7
4,026,685	+		Psest_3854	0.50	+0.8
4,026,685	+		Psest_3854	0.50	+0.5
4,026,685	+		Psest_3854	0.50	+0.4
4,026,686	-		Psest_3854	0.50	-0.0
4,026,686	-		Psest_3854	0.50	-1.9
4,026,686	-		Psest_3854	0.50	+0.8
4,026,686	-		Psest_3854	0.50	-2.2
4,026,686	-		Psest_3854	0.50	-0.1
4,026,686	-		Psest_3854	0.50	-1.1
4,026,946	+		Psest_3854	0.87	-1.2
4,026,946	+		Psest_3854	0.87	-0.7
4,026,946	+		Psest_3854	0.87	-0.9
4,026,946	+		Psest_3854	0.87	+0.5
4,026,946	+		Psest_3854	0.87	+0.2
4,026,947	-		Psest_3854	0.87	-0.1
4,026,947	-		Psest_3854	0.87	+0.5
4,026,947	-		Psest_3854	0.87	-0.4
4,027,113	+				-2.3
4,027,113	+				+0.5
4,027,113	+				+0.9
4,027,114	-				-0.4
4,027,188	+		Psest_3855	0.17	+0.9
4,027,189	-		Psest_3855	0.17	-0.4
4,027,189	-		Psest_3855	0.17	-0.4
4,027,189	-		Psest_3855	0.17	-0.8
4,027,189	-		Psest_3855	0.17	-0.3
4,027,189	-		Psest_3855	0.17	-1.4
4,027,189	-		Psest_3855	0.17	+3.0
4,027,323	+		Psest_3855	0.32	+1.5
4,027,323	+		Psest_3855	0.32	+0.2
4,027,323	+		Psest_3855	0.32	+1.2
4,027,323	+		Psest_3855	0.32	+0.7
4,027,323	+		Psest_3855	0.32	-0.6
4,027,324	-		Psest_3855	0.32	+0.1
4,027,324	-		Psest_3855	0.32	+1.1
4,027,341	+		Psest_3855	0.34	+0.1
4,027,341	+		Psest_3855	0.34	-0.3