Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3022

Experiment: Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.004 mg/ml
3,209,475	+				+0.1
3,209,475	+				+1.4
3,209,475	+				-0.8
3,209,475	+				-0.2
3,209,476	-				+0.4
3,209,553	+		Psest_3021	0.13	-0.2
3,209,553	+		Psest_3021	0.13	+2.6
3,209,635	-		Psest_3021	0.24	+0.4
3,210,010	+		Psest_3021	0.73	-0.4
3,210,010	+		Psest_3021	0.73	-1.9
3,210,010	+		Psest_3021	0.73	+0.9
3,210,011	-		Psest_3021	0.73	-1.1
3,210,097	+		Psest_3021	0.84	+0.2
3,210,098	-		Psest_3021	0.85	+1.7
3,210,098	-		Psest_3021	0.85	+0.4
3,210,098	-		Psest_3021	0.85	+0.3
3,210,098	-		Psest_3021	0.85	+1.2
3,210,119	-		Psest_3021	0.87	+0.2
3,210,210	-				+2.5
3,210,304	+				+0.8
3,210,351	+				+0.0
3,210,351	+				+2.4
3,210,351	+				+0.1
3,210,352	-				+0.6
3,210,352	-				-0.0
3,210,352	-				-0.5
3,210,352	-				+0.1
3,210,352	-				+2.2
3,210,352	-				+0.9
3,210,352	-				-0.2
3,210,352	-				-0.4
3,210,470	+		Psest_3022	0.41	+4.6
3,210,470	+		Psest_3022	0.41	+1.3
3,210,470	+		Psest_3022	0.41	-1.5
3,210,471	-		Psest_3022	0.42	+2.2
3,210,471	-		Psest_3022	0.42	+1.1
3,210,471	-		Psest_3022	0.42	+1.0
3,210,471	-		Psest_3022	0.42	+1.6
3,210,522	+		Psest_3022	0.59	-0.2
3,210,523	-		Psest_3022	0.59	+0.0
3,210,743	+				+1.4
3,210,744	-				+1.2
3,210,744	-				+0.4
3,210,744	-				-0.3
3,210,750	+				+0.2
3,210,750	+				+0.8
3,210,750	+				+1.4
3,210,750	+				+0.4
3,210,750	+				+0.9
3,210,750	+				+0.9
3,210,750	+				-0.1
3,210,751	-				-0.4
3,210,751	-				-0.9
3,210,751	-				+0.2
3,210,751	-				-1.9
3,210,751	-				-1.2
3,210,751	-				-0.2
3,210,751	-				+1.2
3,210,751	-				+0.2
3,210,751	-				+3.1
3,210,751	-				+0.6
3,210,751	-				-0.6
3,210,751	-				+3.6
3,210,751	-				+0.5
3,210,751	-				-0.5
3,210,751	-				-0.1
3,210,751	-				-1.8
3,210,751	-				+0.1
3,210,751	-				-0.5
3,210,751	-				+1.8
3,210,803	+				-2.6
3,210,804	-				-0.1
3,210,804	-				-0.3
3,210,863	+				+0.1
3,210,864	-				-1.1
3,210,864	-				+0.2
3,210,864	-				+0.9
3,210,864	-				+0.4
3,210,864	-				-0.3
3,210,879	-				-0.1
3,210,940	-		Psest_3024	0.12	-2.7
3,210,940	-		Psest_3024	0.12	-1.2
3,211,163	+		Psest_3024	0.32	+0.4
3,211,163	+		Psest_3024	0.32	+0.4
3,211,163	+		Psest_3024	0.32	+2.2
3,211,163	+		Psest_3024	0.32	+0.8
3,211,164	-		Psest_3024	0.32	+0.2
3,211,164	-		Psest_3024	0.32	-0.3
3,211,164	-		Psest_3024	0.32	-0.2
3,211,164	-		Psest_3024	0.32	-0.9
3,211,164	-		Psest_3024	0.32	+0.3
3,211,164	-		Psest_3024	0.32	-0.9
3,211,312	+		Psest_3024	0.45	-0.5
3,211,472	+		Psest_3024	0.59	-0.1
3,211,473	-		Psest_3024	0.59	-0.1