Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2551

Experiment: Neomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2550 and Psest_2551 are separated by 18 nucleotidesPsest_2551 and Psest_2552 are separated by 4 nucleotides Psest_2550: Psest_2550 - Rhodanese-like domain./Cyclic nucleotide-binding domain., at 2,730,385 to 2,731,485 _2550 Psest_2551: Psest_2551 - 1-aminocyclopropane-1-carboxylate deaminase, at 2,731,504 to 2,732,445 _2551 Psest_2552: Psest_2552 - hypothetical protein, at 2,732,450 to 2,733,805 _2552 Position (kb) 2731 2732 2733Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2730.532 kb on + strand, within Psest_2550at 2730.567 kb on - strand, within Psest_2550at 2730.614 kb on - strand, within Psest_2550at 2730.950 kb on + strand, within Psest_2550at 2730.951 kb on - strand, within Psest_2550at 2730.951 kb on - strand, within Psest_2550at 2730.951 kb on - strand, within Psest_2550at 2730.951 kb on - strand, within Psest_2550at 2730.951 kb on - strand, within Psest_2550at 2730.951 kb on - strand, within Psest_2550at 2731.036 kb on + strand, within Psest_2550at 2731.036 kb on + strand, within Psest_2550at 2731.036 kb on + strand, within Psest_2550at 2731.036 kb on + strand, within Psest_2550at 2731.036 kb on + strand, within Psest_2550at 2731.036 kb on + strand, within Psest_2550at 2731.036 kb on + strand, within Psest_2550at 2731.036 kb on + strand, within Psest_2550at 2731.036 kb on + strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.037 kb on - strand, within Psest_2550at 2731.243 kb on - strand, within Psest_2550at 2731.329 kb on - strand, within Psest_2550at 2731.329 kb on - strand, within Psest_2550at 2731.602 kb on - strand, within Psest_2551at 2731.602 kb on - strand, within Psest_2551at 2731.641 kb on + strand, within Psest_2551at 2731.641 kb on + strand, within Psest_2551at 2731.641 kb on + strand, within Psest_2551at 2731.642 kb on - strand, within Psest_2551at 2731.642 kb on - strand, within Psest_2551at 2731.642 kb on - strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.649 kb on + strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.650 kb on - strand, within Psest_2551at 2731.758 kb on - strand, within Psest_2551at 2731.917 kb on + strand, within Psest_2551at 2731.926 kb on - strand, within Psest_2551at 2732.131 kb on + strand, within Psest_2551at 2732.131 kb on + strand, within Psest_2551at 2732.132 kb on - strand, within Psest_2551at 2732.132 kb on - strand, within Psest_2551at 2732.132 kb on - strand, within Psest_2551at 2732.132 kb on - strand, within Psest_2551at 2732.132 kb on - strand, within Psest_2551at 2732.300 kb on - strand, within Psest_2551at 2732.353 kb on + strandat 2732.354 kb on - strandat 2732.354 kb on - strandat 2732.354 kb on - strandat 2732.357 kb on - strandat 2732.456 kb on - strandat 2732.602 kb on - strand, within Psest_2552at 2732.623 kb on - strand, within Psest_2552at 2732.658 kb on + strand, within Psest_2552at 2732.658 kb on + strand, within Psest_2552at 2732.659 kb on - strand, within Psest_2552at 2732.730 kb on + strand, within Psest_2552at 2732.731 kb on - strand, within Psest_2552at 2732.741 kb on + strand, within Psest_2552at 2732.741 kb on + strand, within Psest_2552at 2732.860 kb on - strand, within Psest_2552at 2732.898 kb on + strand, within Psest_2552at 2732.899 kb on - strand, within Psest_2552at 2733.303 kb on + strand, within Psest_2552at 2733.304 kb on - strand, within Psest_2552

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Per-strain Table

Position Strand Gene LocusTag Fraction Neomycin 0.004 mg/ml
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2,730,532 + Psest_2550 0.13 +1.1
2,730,567 - Psest_2550 0.17 -1.1
2,730,614 - Psest_2550 0.21 +0.3
2,730,950 + Psest_2550 0.51 -1.1
2,730,951 - Psest_2550 0.51 +0.5
2,730,951 - Psest_2550 0.51 +0.2
2,730,951 - Psest_2550 0.51 +0.0
2,730,951 - Psest_2550 0.51 +0.0
2,730,951 - Psest_2550 0.51 +1.3
2,730,951 - Psest_2550 0.51 +1.0
2,731,036 + Psest_2550 0.59 +0.5
2,731,036 + Psest_2550 0.59 +2.0
2,731,036 + Psest_2550 0.59 -1.3
2,731,036 + Psest_2550 0.59 -0.6
2,731,036 + Psest_2550 0.59 +1.5
2,731,036 + Psest_2550 0.59 +0.2
2,731,036 + Psest_2550 0.59 +0.3
2,731,036 + Psest_2550 0.59 -1.6
2,731,036 + Psest_2550 0.59 -0.5
2,731,037 - Psest_2550 0.59 -0.8
2,731,037 - Psest_2550 0.59 -0.7
2,731,037 - Psest_2550 0.59 -1.3
2,731,037 - Psest_2550 0.59 +0.9
2,731,037 - Psest_2550 0.59 -0.8
2,731,037 - Psest_2550 0.59 +0.4
2,731,037 - Psest_2550 0.59 -1.4
2,731,037 - Psest_2550 0.59 -1.4
2,731,037 - Psest_2550 0.59 +0.4
2,731,037 - Psest_2550 0.59 +0.7
2,731,037 - Psest_2550 0.59 +0.7
2,731,037 - Psest_2550 0.59 -0.9
2,731,037 - Psest_2550 0.59 -0.8
2,731,037 - Psest_2550 0.59 +0.5
2,731,243 - Psest_2550 0.78 +0.2
2,731,329 - Psest_2550 0.86 +0.2
2,731,329 - Psest_2550 0.86 +0.4
2,731,602 - Psest_2551 0.10 -0.1
2,731,602 - Psest_2551 0.10 +2.0
2,731,641 + Psest_2551 0.15 +0.2
2,731,641 + Psest_2551 0.15 -0.5
2,731,641 + Psest_2551 0.15 -0.0
2,731,642 - Psest_2551 0.15 +0.6
2,731,642 - Psest_2551 0.15 +1.5
2,731,642 - Psest_2551 0.15 +0.7
2,731,649 + Psest_2551 0.15 +0.0
2,731,649 + Psest_2551 0.15 +0.0
2,731,649 + Psest_2551 0.15 +2.3
2,731,649 + Psest_2551 0.15 -0.3
2,731,649 + Psest_2551 0.15 +0.0
2,731,649 + Psest_2551 0.15 +0.7
2,731,649 + Psest_2551 0.15 +1.7
2,731,649 + Psest_2551 0.15 -1.4
2,731,649 + Psest_2551 0.15 -0.9
2,731,649 + Psest_2551 0.15 -2.7
2,731,649 + Psest_2551 0.15 +0.5
2,731,649 + Psest_2551 0.15 -1.0
2,731,649 + Psest_2551 0.15 -2.5
2,731,649 + Psest_2551 0.15 -0.1
2,731,649 + Psest_2551 0.15 -0.8
2,731,650 - Psest_2551 0.15 +0.3
2,731,650 - Psest_2551 0.15 +0.6
2,731,650 - Psest_2551 0.15 +1.6
2,731,650 - Psest_2551 0.15 +1.9
2,731,650 - Psest_2551 0.15 +1.8
2,731,650 - Psest_2551 0.15 +1.2
2,731,650 - Psest_2551 0.15 +2.0
2,731,650 - Psest_2551 0.15 +0.9
2,731,650 - Psest_2551 0.15 -0.0
2,731,650 - Psest_2551 0.15 +0.8
2,731,650 - Psest_2551 0.15 +1.3
2,731,650 - Psest_2551 0.15 +1.1
2,731,650 - Psest_2551 0.15 +1.0
2,731,650 - Psest_2551 0.15 +1.6
2,731,650 - Psest_2551 0.15 +1.0
2,731,650 - Psest_2551 0.15 +1.0
2,731,650 - Psest_2551 0.15 +1.1
2,731,650 - Psest_2551 0.15 -0.3
2,731,650 - Psest_2551 0.15 +0.8
2,731,758 - Psest_2551 0.27 +0.5
2,731,917 + Psest_2551 0.44 -0.6
2,731,926 - Psest_2551 0.45 +1.6
2,732,131 + Psest_2551 0.67 +0.5
2,732,131 + Psest_2551 0.67 +0.9
2,732,132 - Psest_2551 0.67 -0.3
2,732,132 - Psest_2551 0.67 +1.4
2,732,132 - Psest_2551 0.67 +1.3
2,732,132 - Psest_2551 0.67 +0.9
2,732,132 - Psest_2551 0.67 +3.2
2,732,300 - Psest_2551 0.85 +0.9
2,732,353 + +0.7
2,732,354 - +1.9
2,732,354 - +0.1
2,732,354 - -0.6
2,732,357 - -0.0
2,732,456 - +0.3
2,732,602 - Psest_2552 0.11 +1.0
2,732,623 - Psest_2552 0.13 +1.0
2,732,658 + Psest_2552 0.15 +1.6
2,732,658 + Psest_2552 0.15 +0.3
2,732,659 - Psest_2552 0.15 +0.2
2,732,730 + Psest_2552 0.21 -0.8
2,732,731 - Psest_2552 0.21 +0.9
2,732,741 + Psest_2552 0.21 +0.4
2,732,741 + Psest_2552 0.21 +0.6
2,732,860 - Psest_2552 0.30 -0.6
2,732,898 + Psest_2552 0.33 +0.3
2,732,899 - Psest_2552 0.33 +0.8
2,733,303 + Psest_2552 0.63 +0.9
2,733,304 - Psest_2552 0.63 +0.3

Or see this region's nucleotide sequence