Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2405

Experiment: Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.004 mg/ml
2,558,049	-		Psest_2404	0.43	-2.4
2,558,253	+		Psest_2404	0.58	-1.2
2,558,254	-		Psest_2404	0.58	+1.6
2,558,300	+		Psest_2404	0.61	+2.0
2,558,300	+		Psest_2404	0.61	+0.7
2,558,300	+		Psest_2404	0.61	+0.1
2,558,300	+		Psest_2404	0.61	-1.8
2,558,301	-		Psest_2404	0.61	-0.7
2,558,301	-		Psest_2404	0.61	+1.1
2,558,598	-		Psest_2404	0.84	+1.3
2,558,723	+				-0.7
2,558,724	-				+1.1
2,558,724	-				+0.7
2,558,745	-				+0.3
2,558,817	+				+0.8
2,558,817	+				+0.0
2,558,817	+				+0.4
2,558,817	+				+0.1
2,558,817	+				-0.4
2,558,817	+				+0.2
2,558,817	+				+0.6
2,558,818	-				-0.7
2,558,818	-				+0.1
2,558,896	+				+0.4
2,558,896	+				+1.0
2,558,896	+				-2.3
2,558,896	+				+0.7
2,558,896	+				-0.3
2,558,897	-				+0.7
2,558,897	-				+0.3
2,558,897	-				-0.1
2,558,931	+				+0.5
2,558,931	+				-0.7
2,558,934	+				+0.6
2,558,934	+				-0.5
2,558,934	+				-0.7
2,558,934	+				-0.0
2,558,934	+				+0.6
2,558,934	+				+1.7
2,558,935	-				-0.3
2,558,935	-				-0.8
2,558,935	-				+0.5
2,558,935	-				+0.6
2,558,935	-				-0.7
2,559,002	-				+0.1
2,559,218	+		Psest_2405	0.24	+1.4
2,559,255	-		Psest_2405	0.29	+0.5
2,559,255	-		Psest_2405	0.29	+1.4
2,559,635	-		Psest_2405	0.79	+2.0
2,559,971	+				+1.3
2,559,971	+				-1.7
2,560,007	+				-0.3
2,560,008	-				-0.2
2,560,145	+				+0.3
2,560,146	-				-1.5
2,560,354	+				-0.2
2,560,417	+				+1.0
2,560,418	-				+0.5
2,560,418	-				+1.6
2,560,465	+				-0.4
2,560,465	+				+1.1
2,560,466	-				+1.0
2,560,466	-				-0.3
2,560,469	-				-0.5
2,560,486	+				+0.4
2,560,486	+				-0.3
2,560,486	+				-1.3