Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1999

Experiment: Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.004 mg/ml
2,115,241	+		Psest_1997	0.79	+0.4
2,115,252	-		Psest_1997	0.80	-0.0
2,115,361	+				-0.4
2,115,362	-				-1.7
2,115,362	-				-0.2
2,115,379	+				+0.8
2,115,485	-		Psest_1998	0.11	-1.1
2,115,764	+		Psest_1998	0.55	+2.3
2,115,765	-		Psest_1998	0.55	+1.0
2,115,926	+		Psest_1998	0.80	+0.8
2,115,927	-		Psest_1998	0.80	-0.0
2,115,927	-		Psest_1998	0.80	+0.5
2,115,927	-		Psest_1998	0.80	-0.3
2,115,931	-		Psest_1998	0.81	-0.6
2,116,053	+				-1.2
2,116,103	+				-1.0
2,116,201	-				-1.3
2,116,201	-				+0.9
2,116,412	+		Psest_1999	0.21	-1.0
2,116,616	+		Psest_1999	0.39	-1.5
2,117,046	+		Psest_1999	0.77	+3.0
2,117,287	+				-1.4
2,117,287	+				-0.4
2,117,303	+				-0.6
2,117,303	+				+1.3
2,117,303	+				+0.0
2,117,304	-				+0.5
2,117,361	+				+1.2
2,117,426	+				+1.2
2,117,426	+				+1.2
2,117,426	+				-1.6
2,117,427	-				+1.7
2,117,427	-				+0.7
2,117,427	-				+3.6
2,117,427	-				-0.7
2,117,432	+				+1.3
2,117,432	+				+1.8
2,117,432	+				+2.0
2,117,432	+				+3.1
2,117,433	-				+2.4
2,117,433	-				+2.7
2,117,433	-				+0.7
2,117,433	-				+0.8
2,117,487	-		Psest_2000	0.16	+2.3
2,117,487	-		Psest_2000	0.16	+0.6
2,117,502	+		Psest_2000	0.18	+0.8
2,117,573	-		Psest_2000	0.27	+2.2
2,117,575	+		Psest_2000	0.28	-1.5
2,117,575	+		Psest_2000	0.28	+0.9
2,117,628	-		Psest_2000	0.35	+0.8
2,117,628	-		Psest_2000	0.35	+1.1
2,117,791	-		Psest_2000	0.57	+0.9
2,117,873	+		Psest_2000	0.68	-1.4
2,117,952	-		Psest_2000	0.78	+1.5
2,117,989	+		Psest_2000	0.83	-0.0
2,117,990	-		Psest_2000	0.84	+3.1
2,117,992	+		Psest_2000	0.84	+1.2
2,117,992	+		Psest_2000	0.84	+1.5
2,118,102	-				+1.8
2,118,124	-				+0.8
2,118,124	-				+0.9
2,118,135	+				+1.0
2,118,136	-				-0.2
2,118,136	-				-2.6
2,118,138	+				+3.5
2,118,188	+				+0.1
2,118,295	+		Psest_2001	0.15	+0.3
2,118,295	+		Psest_2001	0.15	+0.3
2,118,295	+		Psest_2001	0.15	+0.3