Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1950

Experiment: Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.004 mg/ml
2,066,732	-		Psest_1949	0.62	+0.7
2,066,732	-		Psest_1949	0.62	-1.4
2,066,800	+		Psest_1949	0.65	+0.5
2,067,000	-		Psest_1949	0.74	-0.7
2,067,000	-		Psest_1949	0.74	+1.8
2,067,020	-		Psest_1949	0.75	-0.2
2,067,112	+		Psest_1949	0.79	-2.5
2,067,187	+		Psest_1949	0.82	+0.6
2,067,187	+		Psest_1949	0.82	-1.0
2,067,187	+		Psest_1949	0.82	-0.5
2,067,207	+		Psest_1949	0.83	+0.4
2,067,260	+		Psest_1949	0.86	+1.0
2,067,260	+		Psest_1949	0.86	+0.0
2,067,260	+		Psest_1949	0.86	-0.6
2,067,260	+		Psest_1949	0.86	+0.9
2,067,260	+		Psest_1949	0.86	+0.4
2,067,260	+		Psest_1949	0.86	-0.1
2,067,260	+		Psest_1949	0.86	-1.2
2,067,260	+		Psest_1949	0.86	-0.4
2,067,261	-		Psest_1949	0.86	-1.7
2,067,424	+				-0.7
2,067,424	+				-1.9
2,067,424	+				+0.9
2,067,424	+				+0.3
2,067,424	+				+1.1
2,067,424	+				-0.3
2,067,644	+				-0.5
2,067,645	-				-0.4
2,067,819	+		Psest_1950	0.14	-0.7
2,067,819	+		Psest_1950	0.14	+0.5
2,067,819	+		Psest_1950	0.14	-1.0
2,067,819	+		Psest_1950	0.14	-0.5
2,067,820	-		Psest_1950	0.14	-1.3
2,067,820	-		Psest_1950	0.14	-0.2
2,067,820	-		Psest_1950	0.14	-1.2
2,067,820	-		Psest_1950	0.14	-0.2
2,067,820	-		Psest_1950	0.14	-1.7
2,067,820	-		Psest_1950	0.14	+0.4
2,067,820	-		Psest_1950	0.14	-1.3
2,067,820	-		Psest_1950	0.14	-0.6
2,067,820	-		Psest_1950	0.14	-0.7
2,067,820	-		Psest_1950	0.14	-1.5
2,067,873	+		Psest_1950	0.18	+0.1
2,067,874	-		Psest_1950	0.18	-1.7
2,067,874	-		Psest_1950	0.18	-0.7
2,068,121	+		Psest_1950	0.35	-2.5
2,068,121	+		Psest_1950	0.35	-0.6
2,068,121	+		Psest_1950	0.35	-0.2
2,068,121	+		Psest_1950	0.35	-0.2
2,068,121	+		Psest_1950	0.35	-1.4
2,068,121	+		Psest_1950	0.35	-2.3
2,068,121	+		Psest_1950	0.35	-1.1
2,068,121	+		Psest_1950	0.35	-0.5
2,068,122	-		Psest_1950	0.35	-1.6
2,068,122	-		Psest_1950	0.35	-0.9
2,068,122	-		Psest_1950	0.35	-1.5
2,068,122	-		Psest_1950	0.35	-1.2
2,068,122	-		Psest_1950	0.35	-2.4
2,068,122	-		Psest_1950	0.35	-0.4
2,068,122	-		Psest_1950	0.35	-1.3
2,068,272	-		Psest_1950	0.45	-2.0
2,068,298	+		Psest_1950	0.47	-3.2
2,068,298	+		Psest_1950	0.47	-0.1
2,068,299	-		Psest_1950	0.47	-2.2
2,068,299	-		Psest_1950	0.47	-0.9
2,068,343	-		Psest_1950	0.50	-1.2
2,068,376	+		Psest_1950	0.53	-1.1
2,068,376	+		Psest_1950	0.53	+0.3
2,068,376	+		Psest_1950	0.53	-1.0
2,068,376	+		Psest_1950	0.53	-2.0
2,068,376	+		Psest_1950	0.53	-2.6
2,068,376	+		Psest_1950	0.53	+0.3
2,068,377	-		Psest_1950	0.53	-0.7
2,068,377	-		Psest_1950	0.53	-2.5
2,068,377	-		Psest_1950	0.53	-1.8
2,068,377	-		Psest_1950	0.53	-0.1
2,068,377	-		Psest_1950	0.53	-1.9
2,068,381	+		Psest_1950	0.53	-1.6
2,068,381	+		Psest_1950	0.53	-0.3
2,068,381	+		Psest_1950	0.53	-0.6
2,068,381	+		Psest_1950	0.53	-0.0
2,068,382	-		Psest_1950	0.53	-1.4
2,068,382	-		Psest_1950	0.53	-0.9
2,068,382	-		Psest_1950	0.53	-0.8
2,068,382	-		Psest_1950	0.53	-0.3
2,068,423	+		Psest_1950	0.56	-1.3
2,068,727	+		Psest_1950	0.77	-1.1
2,068,728	-		Psest_1950	0.77	-2.1
2,068,772	+		Psest_1950	0.80	-1.3
2,068,772	+		Psest_1950	0.80	-4.0
2,068,773	-		Psest_1950	0.80	-0.4
2,068,773	-		Psest_1950	0.80	-0.6
2,068,773	-		Psest_1950	0.80	-0.4
2,068,804	+		Psest_1950	0.82	-0.3
2,068,804	+		Psest_1950	0.82	-1.0
2,068,805	-		Psest_1950	0.82	-0.5
2,068,805	-		Psest_1950	0.82	-1.4
2,068,805	-		Psest_1950	0.82	-0.8
2,068,823	+		Psest_1950	0.83	-0.9
2,068,823	+		Psest_1950	0.83	-2.1
2,068,824	-		Psest_1950	0.83	-1.0
2,068,824	-		Psest_1950	0.83	-0.9
2,068,824	-		Psest_1950	0.83	-1.6
2,068,824	-		Psest_1950	0.83	+0.7
2,068,824	-		Psest_1950	0.83	+0.3
2,068,991	-				+0.5
2,068,991	-				-0.9
2,069,043	+				-1.3
2,069,043	+				+0.2
2,069,043	+				-2.4
2,069,044	-				-2.9
2,069,069	+				-1.0
2,069,069	+				-1.0
2,069,069	+				-0.7
2,069,069	+				+0.6
2,069,070	-				-0.3
2,069,070	-				+0.3
2,069,201	+				-0.5
2,069,202	-				+1.4
2,069,202	-				-2.6
2,069,210	+				+1.0
2,069,210	+				+0.4
2,069,210	+				-0.1
2,069,212	+				-1.7
2,069,212	+				-1.0
2,069,213	-				+0.3
2,069,232	+				-1.5
2,069,232	+				-0.8
2,069,232	+				-0.4
2,069,233	-				-0.7
2,069,234	+				-0.4
2,069,234	+				+1.7
2,069,234	+				-0.2
2,069,234	+				+1.1
2,069,234	+				-0.7
2,069,234	+				-1.1
2,069,234	+				-0.4
2,069,234	+				-1.7
2,069,234	+				+0.2
2,069,235	-				+0.7
2,069,235	-				+1.0
2,069,235	-				-0.7
2,069,235	-				-1.7
2,069,235	-				+0.3
2,069,235	-				+1.8
2,069,235	-				-0.0
2,069,322	-				-0.5
2,069,509	-		Psest_1951	0.49	-0.9
2,069,509	-		Psest_1951	0.49	+0.8
2,069,622	+		Psest_1951	0.82	+0.2
2,069,682	+				+1.5
2,069,683	-				+0.3
2,069,990	+		Psest_1952	0.29	+0.0
2,069,991	-		Psest_1952	0.30	-0.5
2,069,991	-		Psest_1952	0.30	+2.6
2,069,991	-		Psest_1952	0.30	-2.0