Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1488

Experiment: Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.004 mg/ml
1,590,550	-				+1.6
1,590,550	-				+0.4
1,590,722	+				+1.1
1,590,722	+				+0.8
1,590,722	+				+1.0
1,590,722	+				-0.5
1,590,722	+				+0.4
1,590,723	-				-1.3
1,590,723	-				+1.4
1,590,723	-				+0.5
1,590,753	-				+1.0
1,590,753	-				+0.4
1,590,753	-				+0.5
1,590,753	-				+1.3
1,590,762	+				+1.2
1,590,762	+				-0.3
1,590,803	-		Psest_1488	0.11	+0.4
1,590,810	-		Psest_1488	0.12	-0.3
1,590,841	-		Psest_1488	0.14	-0.5
1,590,881	+		Psest_1488	0.17	+0.5
1,590,881	+		Psest_1488	0.17	+0.2
1,590,882	-		Psest_1488	0.17	+2.1
1,590,935	+		Psest_1488	0.22	-0.5
1,590,935	+		Psest_1488	0.22	+0.2
1,590,981	-		Psest_1488	0.25	+1.3
1,590,981	-		Psest_1488	0.25	+0.5
1,590,983	+		Psest_1488	0.25	+1.2
1,590,983	+		Psest_1488	0.25	-1.0
1,590,983	+		Psest_1488	0.25	+1.3
1,590,984	-		Psest_1488	0.25	+3.9
1,590,984	-		Psest_1488	0.25	+0.1
1,590,984	-		Psest_1488	0.25	+2.2
1,590,984	-		Psest_1488	0.25	+1.7
1,591,029	-		Psest_1488	0.29	-0.7
1,591,034	+		Psest_1488	0.29	+2.2
1,591,034	+		Psest_1488	0.29	+1.1
1,591,035	-		Psest_1488	0.30	+1.9
1,591,035	-		Psest_1488	0.30	+1.9
1,591,035	-		Psest_1488	0.30	+1.2
1,591,094	+		Psest_1488	0.34	+0.9
1,591,094	+		Psest_1488	0.34	+0.8
1,591,094	+		Psest_1488	0.34	+1.7
1,591,094	+		Psest_1488	0.34	+1.7
1,591,094	+		Psest_1488	0.34	-1.2
1,591,094	+		Psest_1488	0.34	+0.5
1,591,094	+		Psest_1488	0.34	+2.7
1,591,094	+		Psest_1488	0.34	+1.0
1,591,094	+		Psest_1488	0.34	+0.3
1,591,095	-		Psest_1488	0.34	+2.4
1,591,095	-		Psest_1488	0.34	+0.9
1,591,095	-		Psest_1488	0.34	-0.7
1,591,095	-		Psest_1488	0.34	+0.5
1,591,095	-		Psest_1488	0.34	+2.2
1,591,095	-		Psest_1488	0.34	+0.8
1,591,154	+		Psest_1488	0.39	+1.1
1,591,155	-		Psest_1488	0.39	+2.2
1,591,158	+		Psest_1488	0.39	+2.3
1,591,158	+		Psest_1488	0.39	+0.8
1,591,159	-		Psest_1488	0.39	+1.2
1,591,159	-		Psest_1488	0.39	-1.3
1,591,159	-		Psest_1488	0.39	-0.1
1,591,167	-		Psest_1488	0.40	+1.1
1,591,217	+		Psest_1488	0.44	+2.4
1,591,217	+		Psest_1488	0.44	+2.2
1,591,217	+		Psest_1488	0.44	+3.6
1,591,217	+		Psest_1488	0.44	+2.2
1,591,217	+		Psest_1488	0.44	+0.7
1,591,218	-		Psest_1488	0.44	+2.1
1,591,218	-		Psest_1488	0.44	+1.1
1,591,218	-		Psest_1488	0.44	+0.3
1,591,232	+		Psest_1488	0.45	+0.4
1,591,232	+		Psest_1488	0.45	+1.2
1,591,233	-		Psest_1488	0.45	+0.1
1,591,265	+		Psest_1488	0.48	+0.8
1,591,268	+		Psest_1488	0.48	+1.0
1,591,268	+		Psest_1488	0.48	+0.5
1,591,268	+		Psest_1488	0.48	+1.7
1,591,268	+		Psest_1488	0.48	+1.0
1,591,301	+		Psest_1488	0.51	-0.6
1,591,301	+		Psest_1488	0.51	+1.1
1,591,301	+		Psest_1488	0.51	-0.4
1,591,301	+		Psest_1488	0.51	+2.1
1,591,301	+		Psest_1488	0.51	+1.4
1,591,301	+		Psest_1488	0.51	+0.1
1,591,301	+		Psest_1488	0.51	+1.3
1,591,301	+		Psest_1488	0.51	-0.6
1,591,301	+		Psest_1488	0.51	-0.9
1,591,302	-		Psest_1488	0.51	+1.0
1,591,302	-		Psest_1488	0.51	-1.7
1,591,302	-		Psest_1488	0.51	-0.3
1,591,302	-		Psest_1488	0.51	+3.0
1,591,302	-		Psest_1488	0.51	+1.4
1,591,302	-		Psest_1488	0.51	+1.7
1,591,302	-		Psest_1488	0.51	+0.5
1,591,302	-		Psest_1488	0.51	+1.8
1,591,312	+		Psest_1488	0.52	+0.9
1,591,312	+		Psest_1488	0.52	+1.1
1,591,312	+		Psest_1488	0.52	-0.7
1,591,312	+		Psest_1488	0.52	+2.2
1,591,312	+		Psest_1488	0.52	+0.2
1,591,312	+		Psest_1488	0.52	+0.6
1,591,312	+		Psest_1488	0.52	+1.2
1,591,313	-		Psest_1488	0.52	+1.5
1,591,313	-		Psest_1488	0.52	+2.1
1,591,313	-		Psest_1488	0.52	-1.9
1,591,313	-		Psest_1488	0.52	+1.2
1,591,342	+		Psest_1488	0.54	+1.0
1,591,342	+		Psest_1488	0.54	+0.7
1,591,343	-		Psest_1488	0.54	-2.2
1,591,343	-		Psest_1488	0.54	+1.6
1,591,343	-		Psest_1488	0.54	+1.5
1,591,343	-		Psest_1488	0.54	-1.1
1,591,346	+		Psest_1488	0.54	+1.0
1,591,346	+		Psest_1488	0.54	+0.7
1,591,346	+		Psest_1488	0.54	+4.0
1,591,346	+		Psest_1488	0.54	+0.1
1,591,346	+		Psest_1488	0.54	+1.1
1,591,347	-		Psest_1488	0.54	+1.5
1,591,347	-		Psest_1488	0.54	+1.3
1,591,350	+		Psest_1488	0.55	+0.1
1,591,350	+		Psest_1488	0.55	+1.8
1,591,350	+		Psest_1488	0.55	+0.0
1,591,350	+		Psest_1488	0.55	-0.0
1,591,484	+		Psest_1488	0.65	+1.8
1,591,484	+		Psest_1488	0.65	+1.2
1,591,484	+		Psest_1488	0.65	+1.7
1,591,484	+		Psest_1488	0.65	+2.1
1,591,485	-		Psest_1488	0.65	+0.7
1,591,485	-		Psest_1488	0.65	-0.2
1,591,485	-		Psest_1488	0.65	-1.6
1,591,520	+		Psest_1488	0.68	+1.1
1,591,521	-		Psest_1488	0.68	+2.0
1,591,622	+		Psest_1488	0.76	+0.6
1,591,622	+		Psest_1488	0.76	+0.1
1,591,623	-		Psest_1488	0.76	+0.4
1,591,623	-		Psest_1488	0.76	+3.2
1,591,623	-		Psest_1488	0.76	+0.4
1,591,623	-		Psest_1488	0.76	-0.9
1,591,623	-		Psest_1488	0.76	+1.2
1,591,623	-		Psest_1488	0.76	+0.8
1,591,629	-		Psest_1488	0.77	-0.8
1,591,667	+		Psest_1488	0.80	+2.8
1,591,667	+		Psest_1488	0.80	+1.1
1,591,668	-		Psest_1488	0.80	-0.5
1,591,681	+		Psest_1488	0.81	-1.7
1,591,719	+		Psest_1488	0.84	-0.7
1,591,719	+		Psest_1488	0.84	-0.0
1,591,770	-		Psest_1488	0.88	+1.1
1,591,770	-		Psest_1488	0.88	+1.1
1,591,770	-		Psest_1488	0.88	+1.2
1,591,770	-		Psest_1488	0.88	+0.1
1,591,784	+		Psest_1488	0.89	-0.4
1,591,784	+		Psest_1488	0.89	+3.6
1,591,784	+		Psest_1488	0.89	-1.7
1,591,785	-		Psest_1488	0.89	+0.4
1,591,785	-		Psest_1488	0.89	+4.5
1,591,785	-		Psest_1488	0.89	+1.3
1,591,785	-		Psest_1488	0.89	-0.0
1,591,953	+				+1.0
1,591,953	+				+1.4
1,591,953	+				+0.2
1,591,953	-				-2.2
1,591,954	-				-0.4
1,591,954	-				-1.9
1,591,954	-				-1.7
1,591,989	+				+0.2
1,592,033	+				-0.1
1,592,033	+				-0.2
1,592,033	+				-0.9
1,592,033	+				-0.7
1,592,034	-				-2.6
1,592,034	-				-1.5
1,592,052	+				+1.8
1,592,052	+				+0.3
1,592,053	-				-0.4
1,592,065	+				+1.4
1,592,066	-				-0.2
1,592,208	+				+1.0
1,592,262	+				+1.0
1,592,262	+				+0.4
1,592,262	+				-0.0
1,592,262	+				+0.9
1,592,349	+				+0.3
1,592,349	+				+1.0
1,592,349	+				+2.9
1,592,349	+				+0.1
1,592,349	+				-1.9
1,592,349	+				+1.3
1,592,349	+				+0.5
1,592,349	+				+1.2
1,592,349	+				-1.0
1,592,349	+				+3.1
1,592,349	+				-0.8
1,592,349	+				+1.3
1,592,349	+				+1.8
1,592,349	+				-0.8
1,592,349	+				+2.3
1,592,349	+				+1.0
1,592,349	+				-0.1
1,592,349	+				-1.3
1,592,350	-				-1.6
1,592,350	-				-0.1
1,592,350	-				-2.3
1,592,350	-				+1.3
1,592,350	-				-2.0
1,592,350	-				-2.8
1,592,350	-				-1.3
1,592,350	-				-3.3
1,592,350	-				-1.0
1,592,350	-				-1.0
1,592,350	-				-0.4
1,592,351	+				+2.3
1,592,351	+				+0.7
1,592,351	+				-0.2
1,592,351	+				+1.1
1,592,351	+				+3.4
1,592,351	+				+1.5
1,592,351	+				-0.1
1,592,351	+				+0.4
1,592,351	+				+1.1
1,592,351	+				+0.7
1,592,351	+				+2.1
1,592,351	+				+1.3
1,592,351	+				-0.9
1,592,351	+				-1.0
1,592,351	+				-0.2
1,592,351	+				-1.3
1,592,351	+				+0.1
1,592,351	+				+0.6
1,592,351	+				-2.5
1,592,351	+				-1.2
1,592,351	+				+1.0
1,592,351	+				+1.2
1,592,351	+				+0.3
1,592,351	+				+0.8
1,592,351	+				-1.5
1,592,351	+				+0.1
1,592,351	+				-0.3
1,592,351	+				-1.8
1,592,351	+				+1.6
1,592,351	+				-1.1
1,592,351	+				-0.2
1,592,351	+				+0.9
1,592,352	-				-0.0
1,592,352	-				-2.0
1,592,352	-				-2.8
1,592,352	-				-0.4
1,592,352	-				+0.9
1,592,352	-				-1.1
1,592,352	-				+1.3
1,592,352	-				-0.3
1,592,352	-				-0.3
1,592,352	-				+1.0
1,592,352	-				+0.1
1,592,352	-				-0.2
1,592,352	-				-1.5
1,592,352	-				-1.2
1,592,352	-				+0.5
1,592,352	-				-1.5
1,592,352	-				-1.9
1,592,352	-				-1.9
1,592,352	-				-1.0
1,592,352	-				+0.9
1,592,384	+				+1.0
1,592,384	+				+2.2
1,592,384	+				-0.6
1,592,600	+		Psest_1489	0.58	-1.2
1,592,678	+		Psest_1489	0.77	-1.5
1,592,697	+		Psest_1489	0.81	-0.0
1,592,697	+		Psest_1489	0.81	+1.7
1,592,698	-		Psest_1489	0.81	-1.5
1,592,698	-		Psest_1489	0.81	-0.7
1,592,698	-		Psest_1489	0.81	+0.2