Experiment: Neomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0124 and Psest_0125 are separated by 1 nucleotides Psest_0125 and Psest_0126 are separated by 11 nucleotides
Psest_0124: Psest_0124 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 120,517 to 122,034
_0124
Psest_0125: Psest_0125 - type VI secretion ATPase, ClpV1 family, at 122,036 to 124,627
_0125
Psest_0126: Psest_0126 - type VI secretion protein, VC_A0111 family, at 124,639 to 125,646
_0126
Psest_0127: Psest_0127 - type VI secretion protein, VC_A0110 family, at 125,610 to 127,400
_0127
Position (kb)
122
123
124
125 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 121.276 kb on + strand, within Psest_0124 at 121.276 kb on + strand, within Psest_0124 at 121.407 kb on - strand, within Psest_0124 at 121.755 kb on - strand, within Psest_0124 at 121.874 kb on + strand, within Psest_0124 at 121.875 kb on - strand, within Psest_0124 at 121.875 kb on - strand, within Psest_0124 at 121.875 kb on - strand, within Psest_0124 at 121.900 kb on + strand at 121.900 kb on + strand at 121.900 kb on + strand at 122.331 kb on + strand, within Psest_0125 at 122.331 kb on + strand, within Psest_0125 at 122.332 kb on - strand, within Psest_0125 at 122.332 kb on - strand, within Psest_0125 at 122.334 kb on + strand, within Psest_0125 at 122.335 kb on - strand, within Psest_0125 at 122.556 kb on + strand, within Psest_0125 at 122.556 kb on + strand, within Psest_0125 at 122.557 kb on - strand, within Psest_0125 at 122.557 kb on - strand, within Psest_0125 at 122.557 kb on - strand, within Psest_0125 at 122.616 kb on + strand, within Psest_0125 at 122.728 kb on + strand, within Psest_0125 at 122.728 kb on + strand, within Psest_0125 at 122.728 kb on + strand at 122.728 kb on + strand, within Psest_0125 at 122.728 kb on + strand, within Psest_0125 at 122.729 kb on - strand, within Psest_0125 at 122.729 kb on - strand, within Psest_0125 at 123.470 kb on + strand, within Psest_0125 at 123.470 kb on + strand, within Psest_0125 at 123.470 kb on + strand, within Psest_0125 at 123.470 kb on + strand, within Psest_0125 at 123.471 kb on - strand, within Psest_0125 at 123.471 kb on - strand, within Psest_0125 at 123.471 kb on - strand, within Psest_0125 at 123.471 kb on - strand, within Psest_0125 at 123.471 kb on - strand, within Psest_0125 at 123.474 kb on + strand, within Psest_0125 at 123.485 kb on + strand, within Psest_0125 at 123.522 kb on + strand, within Psest_0125 at 123.522 kb on + strand, within Psest_0125 at 123.522 kb on + strand, within Psest_0125 at 123.522 kb on + strand, within Psest_0125 at 123.522 kb on + strand, within Psest_0125 at 123.523 kb on - strand, within Psest_0125 at 123.523 kb on - strand, within Psest_0125 at 123.523 kb on - strand, within Psest_0125 at 123.544 kb on - strand, within Psest_0125 at 123.648 kb on + strand, within Psest_0125 at 123.648 kb on + strand, within Psest_0125 at 123.657 kb on + strand, within Psest_0125 at 123.657 kb on + strand, within Psest_0125 at 123.657 kb on + strand, within Psest_0125 at 123.658 kb on - strand, within Psest_0125 at 123.658 kb on - strand, within Psest_0125 at 124.254 kb on + strand, within Psest_0125 at 124.254 kb on + strand, within Psest_0125 at 124.598 kb on + strand at 124.599 kb on - strand at 125.048 kb on + strand, within Psest_0126 at 125.048 kb on + strand, within Psest_0126 at 125.048 kb on + strand, within Psest_0126 at 125.048 kb on + strand, within Psest_0126 at 125.049 kb on - strand, within Psest_0126 at 125.049 kb on - strand, within Psest_0126 at 125.049 kb on - strand, within Psest_0126 at 125.049 kb on - strand, within Psest_0126 at 125.052 kb on - strand, within Psest_0126 at 125.111 kb on + strand, within Psest_0126 at 125.112 kb on - strand, within Psest_0126 at 125.240 kb on + strand, within Psest_0126 at 125.348 kb on + strand, within Psest_0126 at 125.348 kb on + strand, within Psest_0126 at 125.348 kb on + strand, within Psest_0126 at 125.349 kb on - strand, within Psest_0126 at 125.349 kb on - strand, within Psest_0126 at 125.349 kb on - strand, within Psest_0126 at 125.349 kb on - strand, within Psest_0126 at 125.349 kb on - strand, within Psest_0126 at 125.582 kb on + strand at 125.583 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Neomycin 0.004 mg/ml remove 121,276 + Psest_0124 0.50 -1.2 121,276 + Psest_0124 0.50 -0.4 121,407 - Psest_0124 0.59 -1.1 121,755 - Psest_0124 0.82 +0.3 121,874 + Psest_0124 0.89 -0.2 121,875 - Psest_0124 0.89 +0.0 121,875 - Psest_0124 0.89 -1.0 121,875 - Psest_0124 0.89 +0.0 121,900 + +1.5 121,900 + +0.6 121,900 + +0.8 122,331 + Psest_0125 0.11 -0.2 122,331 + Psest_0125 0.11 +0.7 122,332 - Psest_0125 0.11 -1.1 122,332 - Psest_0125 0.11 -0.8 122,334 + Psest_0125 0.11 +0.5 122,335 - Psest_0125 0.12 -0.3 122,556 + Psest_0125 0.20 +0.8 122,556 + Psest_0125 0.20 -3.4 122,557 - Psest_0125 0.20 -0.1 122,557 - Psest_0125 0.20 -3.1 122,557 - Psest_0125 0.20 -0.7 122,616 + Psest_0125 0.22 +0.8 122,728 + Psest_0125 0.27 +2.1 122,728 + Psest_0125 0.27 -0.6 122,728 + -0.8 122,728 + Psest_0125 0.27 -0.5 122,728 + Psest_0125 0.27 -0.5 122,729 - Psest_0125 0.27 +0.1 122,729 - Psest_0125 0.27 -0.2 123,470 + Psest_0125 0.55 -2.2 123,470 + Psest_0125 0.55 -1.5 123,470 + Psest_0125 0.55 -1.3 123,470 + Psest_0125 0.55 +0.5 123,471 - Psest_0125 0.55 +1.9 123,471 - Psest_0125 0.55 -0.9 123,471 - Psest_0125 0.55 -1.4 123,471 - Psest_0125 0.55 -1.1 123,471 - Psest_0125 0.55 +0.7 123,474 + Psest_0125 0.55 -0.4 123,485 + Psest_0125 0.56 -0.6 123,522 + Psest_0125 0.57 -0.9 123,522 + Psest_0125 0.57 -1.4 123,522 + Psest_0125 0.57 -1.1 123,522 + Psest_0125 0.57 -0.3 123,522 + Psest_0125 0.57 -0.2 123,523 - Psest_0125 0.57 -1.3 123,523 - Psest_0125 0.57 -1.3 123,523 - Psest_0125 0.57 -0.1 123,544 - Psest_0125 0.58 -1.0 123,648 + Psest_0125 0.62 +1.0 123,648 + Psest_0125 0.62 +2.4 123,657 + Psest_0125 0.63 -1.9 123,657 + Psest_0125 0.63 -0.7 123,657 + Psest_0125 0.63 +0.2 123,658 - Psest_0125 0.63 -0.6 123,658 - Psest_0125 0.63 -0.7 124,254 + Psest_0125 0.86 -1.9 124,254 + Psest_0125 0.86 -0.9 124,598 + +0.5 124,599 - -0.2 125,048 + Psest_0126 0.41 +0.0 125,048 + Psest_0126 0.41 -0.3 125,048 + Psest_0126 0.41 +1.4 125,048 + Psest_0126 0.41 -0.3 125,049 - Psest_0126 0.41 +0.8 125,049 - Psest_0126 0.41 +0.9 125,049 - Psest_0126 0.41 -0.2 125,049 - Psest_0126 0.41 +0.4 125,052 - Psest_0126 0.41 +0.2 125,111 + Psest_0126 0.47 -0.1 125,112 - Psest_0126 0.47 +0.7 125,240 + Psest_0126 0.60 -3.1 125,348 + Psest_0126 0.70 -2.3 125,348 + Psest_0126 0.70 +2.2 125,348 + Psest_0126 0.70 -0.6 125,349 - Psest_0126 0.70 +0.2 125,349 - Psest_0126 0.70 -2.7 125,349 - Psest_0126 0.70 -0.4 125,349 - Psest_0126 0.70 -2.3 125,349 - Psest_0126 0.70 +2.6 125,582 + +0.1 125,583 - -0.5
Or see this region's nucleotide sequence